 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopim05g006980.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 289aa MW: 33417 Da PI: 4.6924 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim05g006980.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 56.6 | 4.2e-18 | 70 | 123 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++ ++q++ Le+ Fe ++++ e++ +LA++lgL+ rq+ +WFqNrRa++k
Sopim05g006980.0.1 70 KKRRLLPNQVQFLEKSFEVDNKLEPERKVQLANELGLQPRQIAIWFQNRRARYK 123
45578899*********************************************9 PP
|
| 2 | HD-ZIP_I/II | 124.5 | 4.9e-40 | 69 | 160 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
ekkrrl +qv++LE+sFe ++kLeperKv+la+eLglqprq+a+WFqnrRAR+ktk lEkdy+aLk+++d+lk++ ++L ke+e+Lr+e+
Sopim05g006980.0.1 69 EKKRRLLPNQVQFLEKSFEVDNKLEPERKVQLANELGLQPRQIAIWFQNRRARYKTKVLEKDYDALKASFDKLKADYDTLFKENEDLRNEV 159
69**************************************************************************************998 PP
HD-ZIP_I/II 92 k 92
+
Sopim05g006980.0.1 160 H 160
6 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 289 aa
Download sequence Send
to blast |
MEVGRVINEK LSHCLWMSNS SPSFHGSVSM VNFEDVGRGE VSKERSFFPG IDKEETSNDD 60
YDSCYHQPEK KRRLLPNQVQ FLEKSFEVDN KLEPERKVQL ANELGLQPRQ IAIWFQNRRA 120
RYKTKVLEKD YDALKASFDK LKADYDTLFK ENEDLRNEVH LLTQKLHIRE KGKENSEQSE 180
PISPIDTQEA QKATTPIVVT SNVPKLMCKQ EDATSAKSDV IDSDSPHYTD GNHSSNVFEQ 240
EPSDFSRDED DNLSKNFLYF PEIGDQIQAN SCNLSFQIED QPCWFWQY*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC238747 | 0.0 | AC238747.2 Solanum lycopersicum chromosome 05 clone C05SLe0011J24, complete sequence. |
| GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
