PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim05g005370.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-YB | ||||||||
Protein Properties | Length: 225aa MW: 24791.2 Da PI: 4.3296 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 95.7 | 4e-30 | 54 | 134 | 2 | 84 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 +eqd+++P nv+rim+ + P++ kis+dak t+ +c+sefi fvt ea+ +cqre+r+ti+ +d+ w + ++Gf+dy+epl Sopim05g005370.0.1 54 QEQDQVIP--NVARIMQSTHPSHVKISDDAKRTIYHCMSEFICFVTYEANAHCQREQRNTITVEDMDWVINKFGFDDYIEPLP 134 57788776..***********************************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.0E-25 | 54 | 133 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 6.87E-22 | 61 | 136 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.1E-17 | 62 | 121 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MDNGNHLGGS GNGGFHSYGR SPQPTPADPP SPDTEMSLEL PAHLNQEVVE IISQEQDQVI 60 PNVARIMQST HPSHVKISDD AKRTIYHCMS EFICFVTYEA NAHCQREQRN TITVEDMDWV 120 INKFGFDDYI EPLPYNFPPN SEDDGGECGS LTRESLLKRP MVDTASSSNI TSYNVPSNFP 180 MAHHHFVYPP PMGNGDMQGR ASTSQCAGAS VDTDVESPME EDKE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 2e-29 | 54 | 133 | 7 | 88 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC204082 | 0.0 | AC204082.1 Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05SLe0086I08, complete sequence. | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010320572.1 | 1e-169 | nuclear transcription factor Y subunit B-6-like | ||||
TrEMBL | A0A3Q7GBK0 | 1e-167 | A0A3Q7GBK0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g005370.1.1 | 1e-168 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14016 | 4 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21970.1 | 3e-32 | NF-YB family protein |