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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim05g005360.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-YB | ||||||||
Protein Properties | Length: 225aa MW: 24777.3 Da PI: 4.2731 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 98.3 | 6.4e-31 | 54 | 137 | 2 | 87 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 +eqd+++P nv+rim+ + P++ kis+dak t+ +c+sefi fvt ea+ +cqre+r+ti+ +d+ w + ++Gf+dy+epl y+ Sopim05g005360.0.1 54 QEQDQVIP--NVARIMQSTHPSHVKISDDAKRTMYHCMSEFICFVTYEANAHCQREQRNTITVEDVDWVINKFGFDDYIEPLPYYF 137 57788776..************************************************************************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 8.7E-27 | 54 | 136 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 9.78E-23 | 61 | 138 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.8E-17 | 62 | 121 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MDNGNHVGGS GNGGFHSYGR SPQPTPADPP SPDTEMSLEL PAHLNQEVVE IISQEQDQVI 60 PNVARIMQST HPSHVKISDD AKRTMYHCMS EFICFVTYEA NAHCQREQRN TITVEDVDWV 120 INKFGFDDYI EPLPYYFPPN SEDDGGACGS LMRESLLKRP MVDTASSSNI TPYNVPPNFP 180 MAHHHFVYPP PMGNGDMQGE ASTSQCAGAS VDTDVESPME EDKE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 8e-31 | 54 | 137 | 7 | 92 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC204082 | 0.0 | AC204082.1 Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05SLe0086I08, complete sequence. | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004239342.1 | 1e-168 | nuclear transcription factor Y subunit B-6-like isoform X1 | ||||
TrEMBL | A0A3Q7GBK0 | 1e-160 | A0A3Q7GBK0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g005360.1.1 | 1e-168 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14016 | 4 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 7e-34 | nuclear factor Y, subunit B6 |