PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g081190.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 445aa    MW: 48278.1 Da    PI: 9.5749
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g081190.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.92.9e-10299350556
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                         kr++r   NR++A rs +RK  +i eLe kv++L++e ++L  ++  l+k+ 
  Sopim04g081190.0.1 299 KRAKRILANRLSAARSKERKTRYISELEHKVQKLQTETTTLSTQVTILQKNF 350
                         9*****************************************9998888865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-13295359IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.875297360IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.53E-11299353No hitNo description
PfamPF001702.5E-9299350IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.0E-11299351No hitNo description
CDDcd147031.50E-19300349No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MAQSNSKPPM SSQNFGVGAV SHVRSLSQSS IFSNSCLPPL SPFPPSEPGM VSGHSSLKDI  60
SMEEADVNSQ GVGVVSSFTR DGLPPRKGHR RSNSDVPLGF SAMIQSSPQL MPISGQKVLG  120
RAVSLGDSNG KIDERKPKGE VTDELLFSYM NLENIETLNG SGTKDRDKDS IVSGTKVTGS  180
ESSNNEAESV MKGNNVSIQP TNLREGTKRS ADANIAPAAR HFRSLSMDSA IGNFHYGDES  240
PNLPTSLMMR SGQLSPSNSG NESSSKHNLD FGNSEFSEAE MKKIMADERL AEIAVLDPKR  300
AKRILANRLS AARSKERKTR YISELEHKVQ KLQTETTTLS TQVTILQKNF VEISSLNSEL  360
KFRIQAMEQQ AQLRDALHEA LTAEVQRLKL AAGEHREEGR LPNNMTQQTP VKHNIFQMQR  420
QQPSQMQQLS VGKASAASAT PASA*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX736350.0X73635.1 L.esculentum vsf-1 mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234548.20.0transcription factor VSF-1
TrEMBLO819980.0O81998_SOLLC; Transcription factor VSF-1
STRINGSolyc04g081190.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12652478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21230.15e-74bZIP family protein