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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim04g081000.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
MIKC_MADS |
Protein Properties |
Length: 229aa MW: 26478.2 Da PI: 9.7589 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim04g081000.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 90.6 | 8.1e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ien++nrqvt+skRrng++KKA+EL vLCda+v+++++sstgkl+e++s
Sopim04g081000.0.1 9 KKIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIVMISSTGKLHEFIS 59
68***********************************************86 PP
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2 | K-box | 93.4 | 3.8e-31 | 71 | 169 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91
yqk+ g++ +++++e++q++l+kLk+ ++nL++e+R+++Ge+L++L++++L++L +++++slk iR++K +++ +qie+ +kk ++++e+n
Sopim04g081000.0.1 71 YQKTIGVDIWTTHYEKMQEQLRKLKDVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKFKVIGNQIETYRKKVRNVEEIN 161
78888999*********************************************************************************** PP
K-box 92 kaLrkkle 99
++L +++
Sopim04g081000.0.1 162 RNLLLEFD 169
***87765 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 4.6E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.609 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.97E-38 | 2 | 80 | No hit | No description |
PRINTS | PR00404 | 1.5E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-35 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.0E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.4E-20 | 82 | 167 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.992 | 84 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010093 | Biological Process | specification of floral organ identity |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 229 aa
Download sequence Send
to blast |
MARGKIQIKK IENQTNRQVT YSKRRNGLFK KANELTVLCD AKVSIVMISS TGKLHEFISP 60 SITTKQLFDL YQKTIGVDIW TTHYEKMQEQ LRKLKDVNRN LRKEIRQRMG ESLNDLNYEQ 120 LEELMENVDN SLKLIRERKF KVIGNQIETY RKKVRNVEEI NRNLLLEFDA RQEDPYGGLV 180 EHDGDYNSVL GFPTGGPRIL DLRLQPNNNY HNHLHSGGGS DITTFALG*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor involved in the genetic control of flower development. Necessary for the normal development of petals. Absence of the PMADS1 protein causes transformation of petals into sepals. |