PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g080710.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 406aa    MW: 44131.8 Da    PI: 8.3511
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g080710.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.75.6e-052963341255
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Sopim04g080710.0.1 296 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 334
                         7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.28284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.85E-5294338No hitNo description
SuperFamilySSF474597.98E-11294346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-9298341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MEPANLHQQY QYHQLQFQDQ FPLIGISPNS SSSSNNSCYG GVSTTNTWTP CTTTNTTILN  60
SHGSGLINSY SSGDIINTTK YSSSSDHPLN LVNSMSSTTH QDMGFHQWAN NNIKQENSLD  120
NSYQRFTQML KSPEGGGELS DMNAKLLLGT LSNTGLQLYH GDNNNLLYSS NSSSISTINR  180
GRFSQIYPTI NVSNLNINHQ ANSCSSLDMN LQPLDLINST RYGGSFSQTY GLTTNHFQHS  240
SSESPVNSST SISAFSNGMP EAKRTSNTLE TNKGPQNAPK KSRVDSRASC PPFKVRKEKL  300
GDRIAALQQL VAPFGKTDTA SVLMEAIGYI KFLQNQVETL SVPYMKSSRS KASRSLHGGG  360
GEMNNEEMKR DLRSRGLCLV PLTCLTYVTE GGGGVWPPPN FTGGT*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238285.10.0transcription factor bHLH110
TrEMBLM0ZWL20.0M0ZWL2_SOLTU; Uncharacterized protein
STRINGSolyc04g080710.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75332227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-59bHLH family protein