PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g079590.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 581aa    MW: 64265 Da    PI: 7.1927
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g079590.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.17.8e-1917991199
                        HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                        ++s  l +p kf+++++g    s t +l  +sg+ W v l   +++++ ++ +GW +Fvk++ L++gD++vF++dg+  f  +v+vf++
  Sopim04g079590.0.1 17 MNSEKLKIPSKFIKHMEGG--DSGTTVLVGPSGNAWPVDL--IQQDDGLFFNNGWVSFVKDHCLETGDSLVFRYDGDLHF--TVQVFDE 99
                        566789*******777544..3458999************..99999***************************997777..9999986 PP
2B354.22.6e-17249343198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                         f kv+++ + + s  l +p +fa+eh   +++++++ l +++g++W+v+ i  ++ + ++++ +GW +Fv++n+++ gD+++F+l+++ e 
  Sopim04g079590.0.1 249 FTKVMKRFNISGSYTLHIPYQFATEHL--PNCKVKILLHNLEGKTWTVNSIPtTRVQTSHTFCGGWLSFVRDNNIDLGDTCIFELVRKCEL 337
                         677777777788889***********6..45999****************77566666699***********************9985555 PP

                         ..EEEEE- CS
                  B3  91 elvvkvfr 98 
                           +v+v++
  Sopim04g079590.0.1 338 --RVHVLK 343
                         ..777766 PP
3B345.21.7e-144735541397
                         TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                  B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                         s  l +p +f  eh   +++ ++++l++++g+ W+v+ i + k ++ +++ +GW+ Fv++n+++ gD+++F+l+g+   e++v+v+
  Sopim04g079590.0.1 473 SYTLKVPCRFSMEHL--PNCRTEIVLQNLKGECWTVNSIPTVKVQTlHTFCGGWSAFVRENDIQMGDICIFELIGK--YEMRVHVC 554
                         556889999988886..45889****************99888888999************************995..44567666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.49E-233102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.7E-233101IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.2977100IPR003340B3 DNA binding domain
SMARTSM010194.0E-119100IPR003340B3 DNA binding domain
PfamPF023628.0E-171699IPR003340B3 DNA binding domain
CDDcd100171.78E-181798No hitNo description
SuperFamilySSF1019368.24E-25242344IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-23244345IPR015300DNA-binding pseudobarrel domain
CDDcd100172.36E-20247343No hitNo description
PROSITE profilePS5086313.944249345IPR003340B3 DNA binding domain
PfamPF023626.7E-15249343IPR003340B3 DNA binding domain
SMARTSM010192.4E-16249345IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-23456556IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.4E-22456554IPR015300DNA-binding pseudobarrel domain
CDDcd100175.92E-19459554No hitNo description
PROSITE profilePS5086312.28461557IPR003340B3 DNA binding domain
SMARTSM010197.9E-9461559IPR003340B3 DNA binding domain
PfamPF023621.0E-11465554IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MLDARRPHFL VGFNPFMNSE KLKIPSKFIK HMEGGDSGTT VLVGPSGNAW PVDLIQQDDG  60
LFFNNGWVSF VKDHCLETGD SLVFRYDGDL HFTVQVFDES SCEKEASYNA DCSQGATDLY  120
NLALKKRDRG NSVLLDCMVE GVPKKMKSTE IPSECTSSQD THGLASSKDG YTPEDAVCSY  180
AGRNYAASFL DEMENAGDAL NSKVTIAVPA QAKIIFSNPG NASSEKDMWL PAQEAEKVAG  240
LFTSSLPSFT KVMKRFNISG SYTLHIPYQF ATEHLPNCKV KILLHNLEGK TWTVNSIPTT  300
RVQTSHTFCG GWLSFVRDNN IDLGDTCIFE LVRKCELRVH VLKAEKEGSD YSSKVVDEGL  360
VIDYAKNSGC KSRKVGSSSD QVKVMTYDKK GSTPEKEKHG DMLKNHQLHS QSKISSGDSA  420
IRKPTSSQDK QGSFTKSCMS MKSVPEEKLA AESFISNFPH FVRIMKKFNI SGSYTLKVPC  480
RFSMEHLPNC RTEIVLQNLK GECWTVNSIP TVKVQTLHTF CGGWSAFVRE NDIQMGDICI  540
FELIGKYEMR VHVCAIGKKG LDYQNGTAPK ESDILASLTS *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9145240.0CU914524.3 S.lycopersicum DNA sequence from clone LE_HBa-107D6 on chromosome 4, complete sequence.
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019069240.10.0B3 domain-containing protein Os01g0723500-like
TrEMBLA0A3Q7GAI80.0A0A3Q7GAI8_SOLLC; Uncharacterized protein
STRINGSolyc04g079590.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98202126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-19B3 family protein