PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g078790.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 247aa    MW: 27422.2 Da    PI: 8.7097
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g078790.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.5e-08146186954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Sopim04g078790.0.1 146 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 186
                         699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.218137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-14142196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-13142195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-14143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-6147186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-6160191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDIDMLKSSA TSEDQMEMML MMQLEKFPEF STGNCSELPM MEFSPQGSCN SSNNFQQMDQ  60
NSPNFLNMPS TISFTNSPPI HQNSPNFIPN SGGFNSNSMN RSNMAAMREM IFRIAAMQPI  120
NIDPESVKPP KRRNVKISTD PQSVAARHRR ERISERIRIL QRLVPGGTKM DTASMLDEAI  180
HYVKFLKNQV QSLERAGATR PANGTALTAA AAGLGFPVPM SLSGNYNLPV STKNYHHQNI  240
QQYADV*
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238146.10.0transcription factor HEC2-like
SwissprotQ9SND46e-50HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A3Q7G6L81e-163A0A3Q7G6L8_SOLLC; Uncharacterized protein
STRINGSolyc04g078790.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.13e-37bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]