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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim04g076530.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GATA | ||||||||
Protein Properties | Length: 633aa MW: 70270.5 Da PI: 6.9525 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 47.9 | 1.9e-15 | 199 | 234 | 1 | 34 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C +Cgt++ Tp++Rrgpdg++ LCnaCGl ++ kg Sopim04g076530.0.1 199 CIHCGTSSkaTPMMRRGPDGQRNLCNACGLTWANKG 234 99*******************************998 PP | |||||||
2 | GATA | 48 | 1.8e-15 | 527 | 563 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp +Rrgpdg++tLCnaCGl+++ kg+ Sopim04g076530.0.1 527 CHHCGVSEncTPAMRRGPDGPRTLCNACGLKWANKGT 563 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 1.3E-5 | 73 | 108 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 11.694 | 73 | 108 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.0E-7 | 79 | 107 | IPR010399 | Tify domain |
Pfam | PF06203 | 1.7E-10 | 140 | 182 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 11.32 | 140 | 182 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 9.948 | 193 | 239 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.2E-10 | 193 | 246 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.13E-11 | 195 | 243 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.2E-13 | 197 | 238 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.95E-12 | 198 | 237 | No hit | No description |
Pfam | PF00320 | 2.2E-13 | 199 | 234 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 199 | 226 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS51320 | 11.962 | 389 | 424 | IPR010399 | Tify domain |
SMART | SM00979 | 1.3E-5 | 389 | 424 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.9E-8 | 393 | 422 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 12.689 | 454 | 496 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.1E-14 | 454 | 495 | IPR010402 | CCT domain |
SuperFamily | SSF57716 | 2.52E-11 | 520 | 576 | No hit | No description |
SMART | SM00401 | 7.8E-12 | 521 | 574 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.9E-13 | 526 | 568 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 8.576 | 526 | 577 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 2.96E-14 | 526 | 569 | No hit | No description |
Pfam | PF00320 | 2.0E-13 | 527 | 563 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 527 | 554 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 633 aa Download sequence Send to blast |
MIPQIWLQKM NRQMQAMNVD IHFSGDGEEV PAGNEKAVGN FPVGYEGPVD SVKVTMPHQT 60 VCSASDVVAL QNRETDFDQL TISFRGKIYV FDGVTTQKVH SLFKLLGGYE YSPGTQALGL 120 LSANQKDYVD HPVHCADPKR LESLIRFYEK RKKRCYEKKI RYGIRQEVAF RMKRKNGLFA 180 RKGSNGPKQE NIPSEETRCI HCGTSSKATP MMRRGPDGQR NLCNACGLTW ANKGIMRTLY 240 KASYDNTELE LEIATKPTMK LLNVPPLIKF LHQSASDLDA LERKPYCINI SSSHPTERLY 300 IHTTDKSIMM AENPRPLQAR PFEDHAPLQS LRMVEEEEEE EEEGDEDGAY EDDGGEETMD 360 EAEDVSMKVL NHHQYGGQSQ QLCGGGVVEV SRTSELTLAF EGEVYVFPAV TPDKVQAVLL 420 LLEGCDIPTA VPTVELPFDN KVEDLPKQAN LSKRFASLVR FREKRKERCF DKKIRYSVRK 480 EVAQRMHRKN GQFASLKSSS GSSSCDSAKS SLEGDGTQHS LTIPGKCHHC GVSENCTPAM 540 RRGPDGPRTL CNACGLKWAN KGTLRDLSKA GRTISVELNE LGTPNNPVKA FAEGSLDHCA 600 DVEKNLFSSG SNLANDIPAG IISSSNNLVE KL* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU041360 | 0.0 | CU041360.9 S.lycopersicum DNA sequence from clone SL_MboI-129D14 on chromosome 4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004238013.1 | 0.0 | GATA transcription factor 19-like isoform X2 | ||||
TrEMBL | A0A0V0I6Z5 | 1e-176 | A0A0V0I6Z5_SOLCH; Putative GATA transcription factor 24-like | ||||
STRING | Solyc04g076530.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5602 | 20 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 3e-55 | ZIM-like 1 |