PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim04g074990.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ZF-HD

Protein Properties

Length: 144aa MW: 16096.9 Da PI: 6.3889

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim04g074990.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	107.6	7.4e-34	44	100	2	59
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++vrY+eClkNhA+ +Ggha+DGCgEfmp+ geegt++alkCaAC+CHRnFHR+e ee Sopim04g074990.0.1 44 SNVRYRECLKNHAVGIGGHALDGCGEFMPA-GEEGTMDALKCAACNCHRNFHRKEAEE 100 689************************9.999******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.5E-30	45	98	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-23	47	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.7E-31	47	97	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.998	48	97	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	9.4E-18	97	142	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.17E-9	99	141	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MEFDDDQEEQ EQEIGAVGAE NYVTTGNNSG REEGISTSSI GRKSNVRYRE CLKNHAVGIG 60 GHALDGCGEF MPAGEEGTMD ALKCAACNCH RNFHRKEAEE RLGWRMQKQD EALVQQFCAE 120 TNVKRHVFKV WMHNNKHTLG KKP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	8e-14	100	138	37	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU928132	1e-126	CU928132.3 S.lycopersicum DNA sequence from clone SL_MboI-49I21 on chromosome 4, complete sequence.
GenBank	HG975516	1e-126	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004237971.1	8e-58	zinc-finger homeodomain protein 2
Swissprot	Q6YXH5	1e-29	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A3Q7H0I3	1e-103	A0A3Q7H0I3_SOLLC; Uncharacterized protein
STRING	Solyc04g074990.2.1	1e-104	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA20279	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	3e-30	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]