PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g074810.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 356aa    MW: 39738.4 Da    PI: 6.7034
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g074810.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-12140191155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ +r+l+P++   + ++ + a+i   A++++k+L+
  Sopim04g074810.0.1 140 QRMTHIAVERNRRKQMNEYLAVIRSLMPPS---YVQRGDQASIIGGAINFVKELE 191
                         79****************************...9******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.62E-11138195No hitNo description
SuperFamilySSF474592.22E-16138211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.723139190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9140191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-12140208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-8145196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MFTRSRSILM ALETVIYNQE TFGYGCKEYY NNNLGNFSYN YELGLTQGEG EMSFTNLLDH  60
NNNNNREESS SSPTELMYNN NAREYNIWDP NSSLEDHHLF MEGSPAAELP AAAVRSAATS  120
GRRKRRRTRS CKNKEELENQ RMTHIAVERN RRKQMNEYLA VIRSLMPPSY VQRGDQASII  180
GGAINFVKEL EHHLQTLEAQ KRSHPQKQEH SDNHGSSSTP PFADYFAFPQ YSTHSKSTSP  240
TAAASDVAAA GSCNSPLATE KMSALADIEV SMAESHANLK ILSKRRPKQL LKIVAGLQCL  300
WLTVLHLNVT TVDHMVLYSL SLKLEEGCQL TTADEIADSV NQLLGRIQEE AASSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122126RKRRR
2122127RKRRRT
3140151RMTHIAVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237957.10.0transcription factor bHLH94-like
SwissprotQ9C7T41e-88BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A3Q7G8Q10.0A0A3Q7G8Q1_SOLLC; Uncharacterized protein
STRINGSolyc04g074810.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-85bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]