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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sopim04g072070.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 229aa MW: 26462.8 Da PI: 7.3584 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim04g072070.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 83 | 3.1e-26 | 146 | 204 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYG+K+vk + + r+YY+C+s +C+vkkkver+ +d +++ +tY g+Hnhe
Sopim04g072070.0.1 146 LDDGYKWRKYGKKKVKTNINLRNYYKCSSGDCKVKKKVERDGSDSRYLMTTYVGKHNHE 204
59********************************************************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 229 aa
Download sequence Send
to blast |
MFGSSTSQET TNVISHQHYQ TINPNFYAFH DPLINMNQDH VHNNNYNKYQ DYDTSFLDLF 60 VDGDQEYYSN YTNNNASIYL ENPFKQQEIS SSTYSTSGNS SSASSFDATP THVHMNNENT 120 SIGIEKEKKG EKHAIAFRTK TQLETLDDGY KWRKYGKKKV KTNINLRNYY KCSSGDCKVK 180 KKVERDGSDS RYLMTTYVGK HNHESPFIIY WNEKNQANNF LNESSSSY*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | CU468256 | 0.0 | CU468256.3 S.lycopersicum DNA sequence from clone LE_HBa-66O12 on chromosome 4, complete sequence. |
GenBank | HG975516 | 0.0 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |