PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim04g064830.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Protein Properties

Length: 256aa MW: 28846.2 Da PI: 9.7467

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim04g064830.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.8	1.1e-14	14	102	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 ffkv+ + s l++p f+ + +g++ e+ t++ + W+v++ +++ ++ + + kGW+eFv+ ++L++gDf vF++ g+++f Sopim04g064830.0.1 14 FFKVM--VPGFHS-KLTIPPAFFPKLKGDNLEKGTII---KGKDIWNVEI--NRSEKGiISFDKGWEEFVQNHDLRVGDFAVFEHLGDMRF 96 77888..445555.59*****99977766655666...56789*..888888899***********************99999 PP ..EEEEE- CS B3 91 elvvkvfr 98 v++++ Sopim04g064830.0.1 97 --SVTLLD 102 ..777666 PP
2	B3	52.3	1.1e-16	168	243	14	89
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrse 89 + +p +f++++ + +++t+tl+ +sg+s v l++++++++ +t+GW +F ++n+Lk+gD+++F+ld++++ Sopim04g064830.0.1 168 PYMHIPTEFCQSNALF--QNTTMTLTGPSGKSCPVSLRICNGGKTlyACITRGWHDFFSSNKLKVGDVCLFQLDRSKS 243 4589*******877..6679***********9999988888889*********************98743 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.871	11	104	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.1E-17	12	106	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.51E-15	12	102	No hit	No description
SuperFamily	SSF101936	3.53E-16	13	108	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	1.0E-11	14	104	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.1E-11	14	100	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.2E-18	152	242	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.35E-17	153	241	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.15E-15	154	243	No hit	No description
SMART	SM01019	1.3E-6	154	247	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.856	155	255	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.2E-14	169	243	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MQSSSPELPI SRRFFKVMVP GFHSKLTIPP AFFPKLKGDN LEKGTIIKGK DIWNVEINRS 60 EKGIISFDKG WEEFVQNHDL RVGDFAVFEH LGDMRFSVTL LDSTGCDKKL LEKSEVVPSQ 120 EKKKKVKSAQ PGIEKRKVEG DQPHYQCMKG SSEFTARIKE YNVRKRSPYM HIPTEFCQSN 180 ALFQNTTMTL TGPSGKSCPV SLRICNGGKT LYACITRGWH DFFSSNKLKV GDVCLFQLDR 240 SKSDSNSIAI DVRVL*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU012067	1e-180	CU012067.8 S.lycopersicum DNA sequence from clone LE_HBa-132O11 on chromosome 4, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004237741.1	0.0	B3 domain-containing protein REM9-like
TrEMBL	A0A3Q7G746	0.0	A0A3Q7G746_SOLLC; Uncharacterized protein
STRING	Solyc04g064830.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8536	16	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31690.1	7e-25	B3 family protein