PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim04g064830.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 256aa MW: 28846.2 Da PI: 9.7467 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.8 | 1.1e-14 | 14 | 102 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 ffkv+ + s l++p f+ + +g++ e+ t++ + W+v++ +++ ++ + + kGW+eFv+ ++L++gDf vF++ g+++f Sopim04g064830.0.1 14 FFKVM--VPGFHS-KLTIPPAFFPKLKGDNLEKGTII---KGKDIWNVEI--NRSEKGiISFDKGWEEFVQNHDLRVGDFAVFEHLGDMRF 96 77888..445555.59*******99977766655666...56789*****..888888899*************************99999 PP ..EEEEE- CS B3 91 elvvkvfr 98 v++++ Sopim04g064830.0.1 97 --SVTLLD 102 ..777666 PP | |||||||
2 | B3 | 52.3 | 1.1e-16 | 168 | 243 | 14 | 89 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrse 89 + +p +f++++ + +++t+tl+ +sg+s v l++++++++ +t+GW +F ++n+Lk+gD+++F+ld++++ Sopim04g064830.0.1 168 PYMHIPTEFCQSNALF--QNTTMTLTGPSGKSCPVSLRICNGGKTlyACITRGWHDFFSSNKLKVGDVCLFQLDRSKS 243 4589*********877..6679***************9999988888889***********************98743 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.871 | 11 | 104 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-17 | 12 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.51E-15 | 12 | 102 | No hit | No description |
SuperFamily | SSF101936 | 3.53E-16 | 13 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.0E-11 | 14 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-11 | 14 | 100 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-18 | 152 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.35E-17 | 153 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.15E-15 | 154 | 243 | No hit | No description |
SMART | SM01019 | 1.3E-6 | 154 | 247 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.856 | 155 | 255 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-14 | 169 | 243 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MQSSSPELPI SRRFFKVMVP GFHSKLTIPP AFFPKLKGDN LEKGTIIKGK DIWNVEINRS 60 EKGIISFDKG WEEFVQNHDL RVGDFAVFEH LGDMRFSVTL LDSTGCDKKL LEKSEVVPSQ 120 EKKKKVKSAQ PGIEKRKVEG DQPHYQCMKG SSEFTARIKE YNVRKRSPYM HIPTEFCQSN 180 ALFQNTTMTL TGPSGKSCPV SLRICNGGKT LYACITRGWH DFFSSNKLKV GDVCLFQLDR 240 SKSDSNSIAI DVRVL* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU012067 | 1e-180 | CU012067.8 S.lycopersicum DNA sequence from clone LE_HBa-132O11 on chromosome 4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004237741.1 | 0.0 | B3 domain-containing protein REM9-like | ||||
TrEMBL | A0A3Q7G746 | 0.0 | A0A3Q7G746_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g064830.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8536 | 16 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 7e-25 | B3 family protein |