PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g064800.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 612aa    MW: 69563 Da    PI: 8.6903
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g064800.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.51.2e-08187206525
                         --SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                          Cr+fa+ G C++G+ C+F+H
  Sopim04g064800.0.1 187 VCRNFAA-GNCRRGSDCRFIH 206
                         6******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.014183209IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-5184208IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5186206IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-6187207IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629267294IPR000571Zinc finger, CCCH-type
SMARTSM003560.0087267293IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4271292IPR000571Zinc finger, CCCH-type
SMARTSM003561.4318343IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.746318344IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MVSSFHFSLH RYVFLGIIEP QILSVCFHHS SWMGENAKKR KSLWDAEEES PPKYEEWGPP  60
KPENSWQSKS RSGWSSGDNV TGTEDLRKDN YHYKSMSPAF ERRERRSNSH SPDNGRSRSR  120
SRGRGRGEGR SRSRSRGRDK FRTRSRSRSR DRGSMRVQNR SRSPHNTKRD PYASGDRRAS  180
LHISSQVCRN FAAGNCRRGS DCRFIHLDSA SHRDEGHSED NLSERLGSRP ERGHISRYND  240
SEGPGYQSRD MLPDMHHLED ELNRNRSRGT ITCRNFVKSN CRWGASCRFS HDGASGDYYD  300
KGTRSTSFEH GQDNQATRTG KSLCEYFAAG KCYKDNCEFS HDATSRNHEI RPLDDIGEQV  360
HQMESCPASM IKKLEEGLQE AQLQSVLNPS GPSGMLPSNP ISSLVHALYG QTNPEMRVLD  420
NYHPPDGLEL NTSGNFKLPP DNSFYLDRDS IKVPMDQVNQ TSTVDPELGN NDQIDEVKQQ  480
ENELVEVDGK DKLAPGESKD VQENDHPGTM NLHGKVEEGS GNKDEKVMRL FKNALIEFVK  540
EILKPIWKEG KMSREVHKTI VKKVVDKVTG AIQGEQVPKT QEKIEQYLSH SKPKITKLVQ  600
AYVERLLKNE A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141151RTRSRSRSRDR
2143151RSRSRSRDR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0120670.0CU012067.8 S.lycopersicum DNA sequence from clone LE_HBa-132O11 on chromosome 4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237737.10.0zinc finger CCCH domain-containing protein 55
RefseqXP_010320035.10.0zinc finger CCCH domain-containing protein 55
TrEMBLA0A3Q7GYM10.0A0A3Q7GYM1_SOLLC; Uncharacterized protein
STRINGSolyc04g064800.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.15e-16C3H family protein