PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim04g058090.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 405aa MW: 42667.2 Da PI: 5.0186

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim04g058090.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.1	0.00075	21	43	14	37
HHHHHHHHHHHCTSCCC...TTS- CS HLH 14 driNsafeeLrellPkaskapskK 37 r++s+++eLr+++Pk+ ++ skK Sopim04g058090.0.1 21 CRLKSSIFELRSCIPKL-QGLSKK 43 689*************7.466666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Hamap	MF_00741	44.781	82	404	IPR004733	Phosphoribosylformylglycinamidine cyclo-ligase
SuperFamily	SSF55326	6.58E-45	82	232	No hit	No description
TIGRFAMs	TIGR00878	7.6E-128	82	397	IPR004733	Phosphoribosylformylglycinamidine cyclo-ligase
Gene3D	G3DSA:3.30.1330.10	4.1E-53	103	232	IPR016188	PurM-like, N-terminal domain
CDD	cd02196	1.59E-171	119	396	No hit	No description
Pfam	PF00586	3.7E-15	120	226	IPR016188	PurM-like, N-terminal domain
Gene3D	G3DSA:3.90.650.10	3.5E-68	233	402	IPR010918	AIR synthase-related protein, C-terminal domain
SuperFamily	SSF56042	4.71E-60	233	402	IPR010918	AIR synthase-related protein, C-terminal domain
Pfam	PF02769	5.3E-37	238	401	IPR010918	AIR synthase-related protein, C-terminal domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006189	Biological Process	'de novo' IMP biosynthetic process
GO:0005739	Cellular Component	mitochondrion
GO:0009570	Cellular Component	chloroplast stroma
GO:0004641	Molecular Function	phosphoribosylformylglycinamidine cyclo-ligase activity
GO:0005507	Molecular Function	copper ion binding
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MNTSCGANLE LSRCIAASPV CRLKSSIFEL RSCIPKLQGL SKKLLPLCKD INARSNKERS 60 IPFSVTCSGS QVDTAADEPS SLTYKDAGVD IDAGSELVKR IAKMAPGIGG FGGLFPLGDS 120 YLVAGTDGVG TKLKLAFETG IHDTIGIDLV AMSVNDIVTS GAKPLFFLDY FATSRLDVDL 180 AEKVIKGIVD GCQQSDCALL GGETAEMPDF YAEGEYDLSG FAVGIVKKDS VIDGKNIKVG 240 DVLIGLPSSG VHSNGFSLVR RVLKQSGLSL KDQLPGESIT LGEALIAPTV IYVKQVLDII 300 SKGGVKGIAH ITGGGFTDNI PRVFPKGLGA LIYEGSWTIP PVFKWIQEAG RIEDAEMMRT 360 FNMGVGMVLV VSPEAADGIL MEVQKTSIAY RIGEVVKGDG VSYS*

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MNTSCGANLE LSRCIAASPV CRLKSSIFEL RSCIPKLQGL SKKLLPLCKD INARSNKERS  60
IPFSVTCSGS QVDTAADEPS SLTYKDAGVD IDAGSELVKR IAKMAPGIGG FGGLFPLGDS  120
YLVAGTDGVG TKLKLAFETG IHDTIGIDLV AMSVNDIVTS GAKPLFFLDY FATSRLDVDL  180
AEKVIKGIVD GCQQSDCALL GGETAEMPDF YAEGEYDLSG FAVGIVKKDS VIDGKNIKVG  240
DVLIGLPSSG VHSNGFSLVR RVLKQSGLSL KDQLPGESIT LGEALIAPTV IYVKQVLDII  300
SKGGVKGIAH ITGGGFTDNI PRVFPKGLGA LIYEGSWTIP PVFKWIQEAG RIEDAEMMRT  360
FNMGVGMVLV VSPEAADGIL MEVQKTSIAY RIGEVVKGDG VSYS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5vk4_A	1e-113	80	404	11	348	Phosphoribosylformylglycinamidine cyclo-ligase
5vk4_B	1e-113	80	404	11	348	Phosphoribosylformylglycinamidine cyclo-ligase
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Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY429421	0.0	AY429421.1 Solanum tuberosum 5'-aminoimidazole ribonucleotide synthetase (purM) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004237359.1	0.0	phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial
Refseq	XP_010319703.1	0.0	phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial
Swissprot	P52424	0.0	PUR5_VIGUN; Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial
TrEMBL	A0A3Q7G5K0	0.0	A0A3Q7G5K0_SOLLC; Uncharacterized protein
STRING	Solyc04g058090.2.1	0.0	(Solanum lycopersicum)

Publications ? help Back to Top
Smith PM,Mann AJ,Goggin DE,Atkins CA AIR synthetase in cowpea nodules: a single gene product targeted to two organelles? Plant Mol. Biol., 1998. 36(6): p. 811-20 [PMID:9520274]