PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim04g058090.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 405aa MW: 42667.2 Da PI: 5.0186 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.1 | 0.00075 | 21 | 43 | 14 | 37 |
HHHHHHHHHHHCTSCCC...TTS- CS HLH 14 driNsafeeLrellPkaskapskK 37 r++s+++eLr+++Pk+ ++ skK Sopim04g058090.0.1 21 CRLKSSIFELRSCIPKL-QGLSKK 43 689*************7.466666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Hamap | MF_00741 | 44.781 | 82 | 404 | IPR004733 | Phosphoribosylformylglycinamidine cyclo-ligase |
SuperFamily | SSF55326 | 6.58E-45 | 82 | 232 | No hit | No description |
TIGRFAMs | TIGR00878 | 7.6E-128 | 82 | 397 | IPR004733 | Phosphoribosylformylglycinamidine cyclo-ligase |
Gene3D | G3DSA:3.30.1330.10 | 4.1E-53 | 103 | 232 | IPR016188 | PurM-like, N-terminal domain |
CDD | cd02196 | 1.59E-171 | 119 | 396 | No hit | No description |
Pfam | PF00586 | 3.7E-15 | 120 | 226 | IPR016188 | PurM-like, N-terminal domain |
Gene3D | G3DSA:3.90.650.10 | 3.5E-68 | 233 | 402 | IPR010918 | AIR synthase-related protein, C-terminal domain |
SuperFamily | SSF56042 | 4.71E-60 | 233 | 402 | IPR010918 | AIR synthase-related protein, C-terminal domain |
Pfam | PF02769 | 5.3E-37 | 238 | 401 | IPR010918 | AIR synthase-related protein, C-terminal domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006189 | Biological Process | 'de novo' IMP biosynthetic process | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0004641 | Molecular Function | phosphoribosylformylglycinamidine cyclo-ligase activity | ||||
GO:0005507 | Molecular Function | copper ion binding | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MNTSCGANLE LSRCIAASPV CRLKSSIFEL RSCIPKLQGL SKKLLPLCKD INARSNKERS 60 IPFSVTCSGS QVDTAADEPS SLTYKDAGVD IDAGSELVKR IAKMAPGIGG FGGLFPLGDS 120 YLVAGTDGVG TKLKLAFETG IHDTIGIDLV AMSVNDIVTS GAKPLFFLDY FATSRLDVDL 180 AEKVIKGIVD GCQQSDCALL GGETAEMPDF YAEGEYDLSG FAVGIVKKDS VIDGKNIKVG 240 DVLIGLPSSG VHSNGFSLVR RVLKQSGLSL KDQLPGESIT LGEALIAPTV IYVKQVLDII 300 SKGGVKGIAH ITGGGFTDNI PRVFPKGLGA LIYEGSWTIP PVFKWIQEAG RIEDAEMMRT 360 FNMGVGMVLV VSPEAADGIL MEVQKTSIAY RIGEVVKGDG VSYS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5vk4_A | 1e-113 | 80 | 404 | 11 | 348 | Phosphoribosylformylglycinamidine cyclo-ligase |
5vk4_B | 1e-113 | 80 | 404 | 11 | 348 | Phosphoribosylformylglycinamidine cyclo-ligase |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY429421 | 0.0 | AY429421.1 Solanum tuberosum 5'-aminoimidazole ribonucleotide synthetase (purM) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004237359.1 | 0.0 | phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial | ||||
Refseq | XP_010319703.1 | 0.0 | phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial | ||||
Swissprot | P52424 | 0.0 | PUR5_VIGUN; Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial | ||||
TrEMBL | A0A3Q7G5K0 | 0.0 | A0A3Q7G5K0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g058090.2.1 | 0.0 | (Solanum lycopersicum) |
Publications ? help Back to Top | |||
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