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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim04g056360.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 402aa MW: 45943 Da PI: 6.3246 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim04g056360.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 100.3 | 1.2e-31 | 31 | 88 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
dDgy+WrKYGqK+vkgsefprsYY+Ct ++C+vkkkvers+ ++++++i+Y+geHnh+k
Sopim04g056360.0.1 31 DDGYSWRKYGQKTVKGSEFPRSYYKCTGQNCSVKKKVERSQ-NGEITKIIYNGEHNHQK 88
8****************************************.***************85 PP
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2 | WRKY | 107 | 9.3e-34 | 215 | 273 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK+vkg+++prsYY+Cts++Cpv+k++er+ +d k v++tYeg+Hnhe
Sopim04g056360.0.1 215 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPSCPVRKQIERAPDDIKSVITTYEGKHNHE 273
59********************************************************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 402 aa
Download sequence Send
to blast |
MSGIINFTNT SKQENCHRAM NPNISNSIGP DDGYSWRKYG QKTVKGSEFP RSYYKCTGQN 60 CSVKKKVERS QNGEITKIIY NGEHNHQKSQ PIRRAITSSK SYDLPEEKNG GSNMQFEDNK 120 NVSALSLILN HANINMNLFE TTRESCSPLV SCEDEDEDED EDEVRAIEGI ISVDDNEFEQ 180 RRRRDYCYPA EMNLSSRTTK EPRVIVQIES EIDILDDGYR WRKYGQKVVK GNPNPRSYYK 240 CTSPSCPVRK QIERAPDDIK SVITTYEGKH NHEVPSINKT NGATVGNQTS PLISNDKSSI 300 LPFSESHKIS NIETQVQDFN FQLERKPFGY TRPNFVENQL SNLRCGPLYD LRLPSNLLSY 360 NSFLFNSTQT SNSLPFNLQM PDFSLPNRIP PPDEFHFNDL Q*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975516 | 0.0 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |