PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g054840.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family EIL
Protein Properties Length: 504aa    MW: 58372.6 Da    PI: 4.7667
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g054840.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3365.41e-111333981343
                         XXXXXXXXXXXXXXXXXXXXXXX..XXXXX............XXXXXXX.........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaa...........tgakksn.........ksneqarrkkmsraQDgiLkYMlkemevcnaqG 71 
                         ++lk+rmwkd+ +++  k +k++ + + +a+                 +           +eq+rrkkmsraQD++LkYM+k+me+c+ qG
  Sopim04g054840.0.1  33 DDLKRRMWKDRKRMQIFKANKRDMMINTSATcseelsldqdeD-----EeeeedeesqAKKEQSRRKKMSRAQDSVLKYMVKIMEICKGQG 118
                         79*************9999999999887776666666555540.....155555555599******************************* PP

                         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS- CS
                EIN3  72 fvYgiipekgkpvegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrf 162
                         fvYgi+pekgkpv+g+sdsLr+WWk+kv+f++n+p+ai+     +l+  +e+ l   ++s    l++lqDTtlgSLLs+lm+hc ppqrrf
  Sopim04g054840.0.1 119 FVYGIVPEKGKPVTGSSDSLREWWKDKVRFEKNAPNAIATF-LPKLV--EENVL--VPNSCMDLLNDLQDTTLGSLLSSLMRHCIPPQRRF 204
                         ***************************************99.44566..33444..48899999*************************** PP

                         -TTT--HHHH---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTT CS
                EIN3 163 plekgvepPWWPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqe 253
                         pl+kg++pPWWPtG+elwwg +g+s++ g+ppykkphdlkkawkvsvL+  ikhms +++++r+l+ qsk+lq+km+ake++++++v+nqe
  Sopim04g054840.0.1 205 PLDKGLAPPWWPTGTELWWGDQGFSQEEGPPPYKKPHDLKKAWKVSVLAGIIKHMSVNFDKMRRLVKQSKSLQNKMTAKETATWSRVVNQE 295
                         ******************************************************************************************* PP

                         TT-S--XXXXXXXXXXXXXXXXXXXXXXXXXX..........XXXXXX.XXXXXXXXXX.....................XXXXXXXXXXX CS
                EIN3 254 ekecatvsahssslrkqspkvtlsceqkedve..........gkkeskikhvqavktta.....................gfpvvrkrkkk 313
                         e +++             +++++s++++ed+e           ++++k k v                            g+ +  k   +
  Sopim04g054840.0.1 296 EVLIKMTE----------KALKISTSKEEDQEnvegikedlaLRRNEKRKGV------FesdidtedmlyqnlncaqselGVGFPYKNS-R 369
                         *9885443..........4444444444433321211111112222222222......0222333557777788888877444444444.4 PP

                         XXXXXXXXXX......XXXXXXX.XXXXXX CS
                EIN3 314 psesakvsskevsrtcqssqfrgsetelif 343
                          ++++++s ++  ++ ++++++  e+ ++f
  Sopim04g054840.0.1 370 MDNETTCSHHGKQTMNEQQSVN-DESLNMF 398
                         5777777777664444444444.4444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.7E-11033296No hitNo description
Gene3DG3DSA:1.10.3180.108.1E-64173302IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167684.45E-56176299IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MVGFEEIIEP FSPINSELVE ENKEIDDEEI NYDDLKRRMW KDRKRMQIFK ANKRDMMINT  60
SATCSEELSL DQDEDEEEEE DEESQAKKEQ SRRKKMSRAQ DSVLKYMVKI MEICKGQGFV  120
YGIVPEKGKP VTGSSDSLRE WWKDKVRFEK NAPNAIATFL PKLVEENVLV PNSCMDLLND  180
LQDTTLGSLL SSLMRHCIPP QRRFPLDKGL APPWWPTGTE LWWGDQGFSQ EEGPPPYKKP  240
HDLKKAWKVS VLAGIIKHMS VNFDKMRRLV KQSKSLQNKM TAKETATWSR VVNQEEVLIK  300
MTEKALKIST SKEEDQENVE GIKEDLALRR NEKRKGVFES DIDTEDMLYQ NLNCAQSELG  360
VGFPYKNSRM DNETTCSHHG KQTMNEQQSV NDESLNMFMN NFTSLIGTQP ILHKEIMVGD  420
DHHSEHDGMN MDIKRSVDNY HIAQYANRGS IEENFEVFWG DNNVLEQHHY DSIMNLNDTP  480
KENEHYQSPL SVWDLAYEDP SEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A2e-541783006128Protein ETHYLENE INSENSITIVE 3
4zds_B2e-541783006128Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328334RRNEKRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010319747.10.0putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A3Q7G4Y40.0A0A3Q7G4Y4_SOLLC; Uncharacterized protein
STRINGSolyc04g054840.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30423178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.11e-117EIL family protein