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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim04g050210.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 367aa MW: 41638.9 Da PI: 4.998 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim04g050210.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 87.6 | 1.1e-27 | 233 | 291 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
+D ++WrKYGqK++k+s+fpr+YY+C+++ C++kkk+e+s +d+k++ + Y++eHnh+
Sopim04g050210.0.1 233 NDIWTWRKYGQKHIKDSPFPRNYYKCSTSkLCKAKKKIEKSPRDEKIFLVSYSDEHNHD 291
8*************************99879***************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 367 aa
Download sequence Send
to blast |
MEDDSWDIGA VVRSCNFNRP DNVVAPELDF ETHLNNILNS FDALLDPEMT IFNGSSETFS 60 LDFQTAHQEK PDAIVTSFDI NRVYNVVAPN LEFETYLNNI LNSFDALLDP DMTIFNGLSE 120 IFSLDFQTAH QEKLDDQITI NQSCNQQLYL DMIQQSQFIQ QSSFPPLSTI VACVPPTTTT 180 PKECIDLQQQ LDIGANIYPN LTNVMKTPLI QTTTRKNQSI RITYELLQEE LTNDIWTWRK 240 YGQKHIKDSP FPRNYYKCST SKLCKAKKKI EKSPRDEKIF LVSYSDEHNH DPPMNHKKHA 300 SCNSSYELKL PKGINIVPKT STLSASNSSS KCVRHSSDVA SSIITTMPPL EIRREKNDCC 360 DCGGQM*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975516 | 0.0 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |