 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopim04g050010.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
LBD |
| Protein Properties |
Length: 166aa MW: 18812.5 Da PI: 5.5755 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim04g050010.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 136.6 | 9.2e-43 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91
+CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++reda++s+vyeA+ar+rdPvyG++++i +lq+q+++l+
Sopim04g050010.0.1 13 PCAACKILRRRCVEKCVLAPYFPPTHPLKFTIAHRVFGASNIIKMLQELPEDQREDAVNSMVYEANARIRDPVYGCAAIICQLQKQISELQ 103
7****************************************************************************************** PP
DUF260 92 aelallkee 100
a+l++++ e
Sopim04g050010.0.1 104 ADLVKAQVE 112
***999865 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 166 aa
Download sequence Send
to blast |
MEDTSEYSCP HHPCAACKIL RRRCVEKCVL APYFPPTHPL KFTIAHRVFG ASNIIKMLQE 60
LPEDQREDAV NSMVYEANAR IRDPVYGCAA IICQLQKQIS ELQADLVKAQ VEIMNVQIQN 120
TNLVALICTE MTQNQENNDH QQAYGNSNTC LEDNNLYAPW KSLWT*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975516 | 1e-178 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
