PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g047870.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 191aa    MW: 21695.2 Da    PI: 10.6996
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g047870.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.32.7e-201763349
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        i n +n  vtfskRr+g+ KKA EL+ LC+ae+a++ifs++gk++ +
  Sopim04g047870.0.1 17 ITNGRNLGVTFSKRRAGLYKKACELCMLCGAEIAIVIFSPEGKIFSF 63
                        889999*************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-24766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.75767IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-24890IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-17929IPR002100Transcription factor, MADS-box
PfamPF003192.6E-221663IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-172944IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-174465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MSRRIFKGRQ RVDMVKITNG RNLGVTFSKR RAGLYKKACE LCMLCGAEIA IVIFSPEGKI  60
FSFGHPSVET LVERFLGRNL PPPNNDVHNQ QIVAHREAGI RELNTRLMNV EGALQMEKNR  120
GESLQEIRKK ADGVWWQSPI KELNLFHLQH LKRALEILKQ KVVKEAQMVN NNAFPFQTLG  180
SAWSPPNYTS *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237686.11e-140agamous-like MADS-box protein AGL62
TrEMBLA0A3Q7G4451e-139A0A3Q7G445_SOLLC; Uncharacterized protein
STRINGSolyc04g047870.1.11e-140(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-48AGAMOUS-like 62