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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim04g025760.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 228aa MW: 26891.3 Da PI: 5.6667 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 53.8 | 6.4e-17 | 4 | 122 | 10 | 128 |
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy.Wkatgkdkevlskkge 98 tde+l+ + L+k ++g +++ + i+ vd+y eP +L +++ ++++ yfF++ ++k+ +gk+ nr++ g+ Wk ++ke+l+k+++ Sopim04g025760.0.1 4 TDEDLI-RCLTKFIRGMPIDY-DDIPYVDLYGDkEPAELFQNL-GNNHVNYFFTQLKRKAIKGKNFNRSIVGGRkWKGRDNSKEILDKERS 91 89****.77************.67******97549****7444.344566******************7777766**************** PP NAM 99 lvglkktLvfykg.rapkgektdWvmheyrl 128 +g kkt+ f ++ +++ e W+++ey l Sopim04g025760.0.1 92 RIGYKKTFRFDEEsGSEDKEIVYWIVKEYCL 122 **********9652444557899******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 18.48 | 1 | 149 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-6 | 4 | 122 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.16E-16 | 4 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MKYTDEDLIR CLTKFIRGMP IDYDDIPYVD LYGDKEPAEL FQNLGNNHVN YFFTQLKRKA 60 IKGKNFNRSI VGGRKWKGRD NSKEILDKER SRIGYKKTFR FDEESGSEDK EIVYWIVKEY 120 CLDKTTVDVL RECGEIRHED FVVCFITKKV NLCKHHQDTS TTTENVVPDC VLNLSRDHDE 180 WLYGAKIWQL PPLDESFKAL TDEELNYFDT PDPEYPHAYI HENKKLN* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975516 | 0.0 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004237307.1 | 1e-169 | uncharacterized protein LOC101265124 | ||||
TrEMBL | A0A3Q7G1S3 | 1e-167 | A0A3Q7G1S3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g025760.1.1 | 1e-168 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3381 | 10 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61910.1 | 5e-09 | NAC domain protein 66 |