PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g025760.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 228aa    MW: 26891.3 Da    PI: 5.6667
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g025760.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.86.4e-17412210128
                 NAM  10 tdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy.Wkatgkdkevlskkge 98 
                         tde+l+ + L+k ++g +++  + i+ vd+y   eP +L +++ ++++  yfF++ ++k+ +gk+ nr++  g+ Wk   ++ke+l+k+++
  Sopim04g025760.0.1   4 TDEDLI-RCLTKFIRGMPIDY-DDIPYVDLYGDkEPAELFQNL-GNNHVNYFFTQLKRKAIKGKNFNRSIVGGRkWKGRDNSKEILDKERS 91 
                         89****.77************.67******97549****7444.344566******************7777766**************** PP

                 NAM  99 lvglkktLvfykg.rapkgektdWvmheyrl 128
                          +g kkt+ f ++  +++ e   W+++ey l
  Sopim04g025760.0.1  92 RIGYKKTFRFDEEsGSEDKEIVYWIVKEYCL 122
                         **********9652444557899******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.481149IPR003441NAC domain
PfamPF023653.9E-64122IPR003441NAC domain
SuperFamilySSF1019411.16E-164148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MKYTDEDLIR CLTKFIRGMP IDYDDIPYVD LYGDKEPAEL FQNLGNNHVN YFFTQLKRKA  60
IKGKNFNRSI VGGRKWKGRD NSKEILDKER SRIGYKKTFR FDEESGSEDK EIVYWIVKEY  120
CLDKTTVDVL RECGEIRHED FVVCFITKKV NLCKHHQDTS TTTENVVPDC VLNLSRDHDE  180
WLYGAKIWQL PPLDESFKAL TDEELNYFDT PDPEYPHAYI HENKKLN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237307.11e-169uncharacterized protein LOC101265124
TrEMBLA0A3Q7G1S31e-167A0A3Q7G1S3_SOLLC; Uncharacterized protein
STRINGSolyc04g025760.1.11e-168(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33811041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61910.15e-09NAC domain protein 66