 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopim04g025760.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
NAC |
| Protein Properties |
Length: 228aa MW: 26891.3 Da PI: 5.6667 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim04g025760.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 53.8 | 6.4e-17 | 4 | 122 | 10 | 128 |
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy.Wkatgkdkevlskkge 98
tde+l+ + L+k ++g +++ + i+ vd+y eP +L +++ ++++ yfF++ ++k+ +gk+ nr++ g+ Wk ++ke+l+k+++
Sopim04g025760.0.1 4 TDEDLI-RCLTKFIRGMPIDY-DDIPYVDLYGDkEPAELFQNL-GNNHVNYFFTQLKRKAIKGKNFNRSIVGGRkWKGRDNSKEILDKERS 91
89****.77************.67******97549****7444.344566******************7777766**************** PP
NAM 99 lvglkktLvfykg.rapkgektdWvmheyrl 128
+g kkt+ f ++ +++ e W+++ey l
Sopim04g025760.0.1 92 RIGYKKTFRFDEEsGSEDKEIVYWIVKEYCL 122
**********9652444557899******87 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 228 aa
Download sequence Send
to blast |
MKYTDEDLIR CLTKFIRGMP IDYDDIPYVD LYGDKEPAEL FQNLGNNHVN YFFTQLKRKA 60
IKGKNFNRSI VGGRKWKGRD NSKEILDKER SRIGYKKTFR FDEESGSEDK EIVYWIVKEY 120
CLDKTTVDVL RECGEIRHED FVVCFITKKV NLCKHHQDTS TTTENVVPDC VLNLSRDHDE 180
WLYGAKIWQL PPLDESFKAL TDEELNYFDT PDPEYPHAYI HENKKLN*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975516 | 0.0 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
