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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim04g015960.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 283aa MW: 32588.2 Da PI: 10.0819 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 30.7 | 9.2e-10 | 32 | 156 | 16 | 128 |
NAM 16 veyLkkkvegkkleleev.ikevd....iykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 ++yL k v gk+++ e++ i++vd i + P ++ ++ +++++ + F+ ++k++ + ++ t g+Wk k k++++++++++ Sopim04g015960.0.1 32 MNYLVKYVIGKSFPYEHTvIEDVDevygIRLYSPLQILgTTQGTKKNKRFIFTFQNKRNC-KVFISKDTP-GFWKPNPKIKSIFDSNKKHI 120 489*********777554488885444466789*99973343445557799999888765.455556555.***************99999 PP NAM 101 glkktLvfy........kgrapkgektdWvmheyrl 128 g k+ +y ++++++ +k++W + ey l Sopim04g015960.0.1 121 GNIKISWYYyydtnngrRKSSKRLKKSEWHIREYYL 156 9988877776898866555666778*********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 12.647 | 18 | 179 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.75E-12 | 32 | 176 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MEVFDLSSME KSGSSKVTDN GGRSKALDKR MMNYLVKYVI GKSFPYEHTV IEDVDEVYGI 60 RLYSPLQILG TTQGTKKNKR FIFTFQNKRN CKVFISKDTP GFWKPNPKIK SIFDSNKKHI 120 GNIKISWYYY YDTNNGRRKS SKRLKKSEWH IREYYLSSKY LPPNKVERKD VILTMMMKTK 180 EQKGGNSNNN NQEKSDKAMQ IIQSQEDGHV QLDHNNGDAV EMSVENQLIM QSLQSLQLSD 240 KAMQIIQSPQ GGQVQLDHKN GDTVGMSVEN QLIMQPLQRL QL* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975516 | 0.0 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004236605.1 | 0.0 | uncharacterized protein LOC101267222 | ||||
TrEMBL | A0A3Q7G0G5 | 0.0 | A0A3Q7G0G5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g015960.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14078 | 5 | 10 |