PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g015500.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 218aa    MW: 24565 Da    PI: 5.0008
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g015500.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3474.5e-1544132198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffk+ ++++++k++   +p +f++ehg +   +  + le ++g  W+v+l   ++sg+++l +GW++F +   +  g f++F+++g+s+f 
  Sopim04g015500.0.1  44 FFKIILSPHASKLH---IPDEFVTEHGAN--LGDIVLLEVPNGVAWKVRL--LNSSGMVWLNEGWNKFKEYYSIGCGYFLLFRYKGNSQF- 126
                         78888788877766...*********977..776888999**********..**********************************9999. PP

                         .EEEEE- CS
                  B3  92 lvvkvfr 98 
                          +v +f+
  Sopim04g015500.0.1 127 -CVFIFD 132
                         .777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-2238134IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-2440141IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.44941134IPR003340B3 DNA binding domain
CDDcd100171.72E-1942132No hitNo description
PfamPF023629.0E-1344132IPR003340B3 DNA binding domain
SMARTSM010192.0E-1244134IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVDRREDHLA ETAARREKQP AGMASRQGQG EPRPVDIPER TPHFFKIILS PHASKLHIPD  60
EFVTEHGANL GDIVLLEVPN GVAWKVRLLN SSGMVWLNEG WNKFKEYYSI GCGYFLLFRY  120
KGNSQFCVFI FDLSASEIEY PPGPNEDMTP ENRSVLCVRL EENGINLPPP GEPPKEKRIN  180
LTPPNDPPEE DVIYLPPPGI YTMEELSLIS MPSRPKV*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2541340.0AC254134.2 Solanum lycopersicum strain Heinz 1706 chromosome 9 clone sle-27o4 map 9, complete sequence.
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236625.11e-159B3 domain-containing protein At1g49475 isoform X2
TrEMBLA0A3Q7G0B51e-158A0A3Q7G0B5_SOLLC; Uncharacterized protein
STRINGSolyc04g015500.2.11e-158(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-25B3 family protein