PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim04g009440.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 302aa MW: 34835.2 Da PI: 7.8928

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim04g009440.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.7	1.6e-51	13	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lp+GfrFhPtd+elv++yL++k++g+++ + ++i+e+d+yk++Pw+Lp+k+ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk+ Sopim04g009440.0.1 13 LPAGFRFHPTDDELVQHYLCRKCAGQSIAV-SIIAEIDLYKFDPWQLPEKALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKP 102 799***********************99.89***********8777889********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v + ++ g+kk Lvfy g+ap+g kt+W+mheyrl Sopim04g009440.0.1 103 VGK--PKTLGIKKALVFYAGKAPRGIKTNWIMHEYRL 137 98..778**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-61	9	163	IPR003441	NAC domain
PROSITE profile	PS51005	59.279	13	163	IPR003441	NAC domain
Pfam	PF02365	3.8E-27	14	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MNKGANGNQQ LELPAGFRFH PTDDELVQHY LCRKCAGQSI AVSIIAEIDL YKFDPWQLPE 60 KALYGEKEWY FFSPRDRKYP NGSRPNRAAG TGYWKATGAD KPVGKPKTLG IKKALVFYAG 120 KAPRGIKTNW IMHEYRLANV DRSAGKNNNL RLDDWVLCRI YNKKGTLEKH YNVDNKETTS 180 FGEFDEEIKP KILPTQLAPM PPRPRSTPAN DYFYFESSES MTRMHTTNSS SGSEHVLSPC 240 DKEVQSAPKW DEDHRNTLDF QLNYLDGLLN EPFETQMQQQ ICNFDQFNNF QDMFLYMQKP 300 Y*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	8e-86	1	169	3	174	Stress-induced transcription factor NAC1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY498713	0.0	AY498713.1 Lycopersicon esculentum NAC domain protein mRNA, complete cds.
GenBank	EU670750	0.0	EU670750.1 Solanum lycopersicum cultivar LA2711 NAC domain protein 1 (SlNAC1) mRNA, complete cds.
GenBank	KC447280	0.0	KC447280.1 Solanum lycopersicum cultivar M-82 NAC domain protein (NAC1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001234482.1	0.0	NAC domain protein
Swissprot	Q39013	1e-123	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	M9TNM6	0.0	M9TNM6_SOLPI; NAC domain protein
TrEMBL	Q6RH27	0.0	Q6RH27_SOLLC; NAC domain protein
STRING	Solyc04g009440.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1239	24	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-123	NAC family protein

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]