PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g008550.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 685aa    MW: 76587 Da    PI: 6.3135
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g008550.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.47.7e-06125145425
                         ---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                         ++C ff++ G+C  GdrC+F H
  Sopim04g008550.0.1 125 VPCIFFQQ-GFCLKGDRCPFFH 145
                         79******.***********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.1223160IPR000571Zinc finger, CCCH-type
PfamPF156632.6E-113286No hitNo description
SMARTSM003560.00233259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.9536288IPR000571Zinc finger, CCCH-type
SMARTSM003560.0156487IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.948121148IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4122147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-5123146IPR000571Zinc finger, CCCH-type
PfamPF146080.085126145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MVGPTPPQKL QIQPPPSSTP AVAPSAEEEA LKRNTDCVYF LASPLTCKKG SECEYRHSDV  60
ARLNPRDCYY WLNGSCLNPK CAFRHPPLDG LLGAQVTTPK GSSAPPVASV APTPNVPYGS  120
SKQGVPCIFF QQGFCLKGDR CPFFHAPLFG SNKAPPHPVS TASASTEKTN FKAFGGLEKC  180
VQEKTFFQTN IWKSGELSVQ AQPVEKLKTP LPKNNAVFNG NVLPSTPVID VAHNRHKPKS  240
VPPPNGNPVG RSNRVQQSAR FDDHSNFQNK DDEISRELSP GFDVLVDDEL RVADVDQDMY  300
HDGYGHDSHD RLPGRSGRVQ HRTSSERVQG ESAHLERRRY GRAHSPEDVR ESDLRHRLSK  360
HNRVNGLRSV ISQDYASEKH VEDRGYRSSR RDRPYVPSHD SSLASRLRGR IKLPSRSPSP  420
TNGTDMRLDR ARDRGRLSSE RPQLFSQQGR LRDRIKGRVQ EDLNDSGRNN SGPRIRRDVS  480
ENDSNFSGPR SLAELKGRKT AETNEQNIDE QQALGKRKFQ KRDDYQQTGG DNISFDGPMP  540
LQEILKRKRN SKTGMTSDKS EDHQHERNDH ALPVVTSSIS RNNTDFEQKE ESDPPSGVLA  600
DHKSPAHHVA NELEAEEGMI MEEADDQDPE AEGHDQRDGD YDYEQVDGED YNLDEGENID  660
AGEEYLDEDD DEDEFAKKMG VVFS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236893.10.0zinc finger CCCH domain-containing protein 17
TrEMBLA0A3Q7FW520.0A0A3Q7FW52_SOLLC; Uncharacterized protein
STRINGSolyc04g008550.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40241633