PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim04g008500.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 518aa MW: 57519.5 Da PI: 9.23 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 53 | 73 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k F r nL+ H r H Sopim04g008500.0.1 53 CEVCNKGFQREQNLQLHRRGH 73 *******************88 PP | |||||||
2 | zf-C2H2 | 14.6 | 9.7e-05 | 128 | 150 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Sopim04g008500.0.1 128 FKCEKCSKKYAVQSDWKAHTKTC 150 89*******************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 9.8E-6 | 50 | 73 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.95E-7 | 50 | 73 | No hit | No description |
SMART | SM00355 | 0.025 | 51 | 73 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.97 | 51 | 73 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 53 | 73 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 160 | 93 | 123 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.6E-5 | 116 | 149 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.95E-7 | 123 | 148 | No hit | No description |
SMART | SM00355 | 88 | 128 | 148 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 518 aa Download sequence Send to blast |
MREEELSQNQ QENLLQAQAP SKKRRNQPGT PSPDAEVIAL SPNTLMATNR FLCEVCNKGF 60 QREQNLQLHR RGHNLPWKLK QKNTKEVAKR KVYLCPEPTC VHHEPSRALG DLTGIKKHYF 120 RKHGEKKFKC EKCSKKYAVQ SDWKAHTKTC GTREYRCDCG TLFSRRDSFI THRAFCDALV 180 QENARNILSP NSLMNTLGMN NNQYLYGSSS NINLGTFSKL GNNNNITKTT TTTTTTTSGV 240 QFDHHHHDNN LIGSSTTTTT TTNNPFFLQD TNQDHYNANN NNIKPLMVHG LMQLPNLDHN 300 NNNSSSSTTM FNLNFFQNNL STNSGILGDH HHHHHRHDNN SNISCSIPSL YGVQVLESSN 360 TTFSSGPIMS ATALLQKAAQ MGSSSTSNIS ATASLFKAFG SNTSGSSSSG TKSDHQAFNF 420 GSDITDSGII NAYGGGSHEG YNTTTKLNFE QNQGPPQKKQ LTRDFLGVGE IVRSMNGRFS 480 TQREQQQQNN GLNNMMSSLL DPERNQIQQS FGSATND* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 8e-33 | 124 | 201 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 8e-33 | 124 | 201 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00256 | DAP | Transfer from AT2G02080 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975516 | 0.0 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004236896.1 | 0.0 | protein indeterminate-domain 5, chloroplastic isoform X2 | ||||
Swissprot | Q8GYC1 | 1e-125 | IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic | ||||
TrEMBL | A0A3Q7FW43 | 0.0 | A0A3Q7FW43_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g008500.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G02080.1 | 1e-108 | indeterminate(ID)-domain 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|