PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g008050.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARR-B
Protein Properties Length: 655aa    MW: 71706.9 Da    PI: 7.2385
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g008050.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.62.9e-28211264155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Sopim04g008050.0.1 211 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 264
                         79*******************.********************************8 PP
2Response_reg76.68.7e-26281361109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl+vdD+ + +++++q+l++ +y +v++++++  al+ll+ek+  +D++l D+ mp+mdG++ll+     e++lp+i++++ g  +++ + 
  Sopim04g008050.0.1  28 VLVVDDDVVCLRIIEQMLRRCKY-SVTTCTQAMVALNLLREKRgtFDIVLSDVHMPDMDGFKLLELVGL-EMDLPVIMMSGDGRTNLVMRG 116
                         89*********************.***************999999*******************87754.558****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         ++ Ga d+l Kp+  eel +
  Sopim04g008050.0.1 117 VQHGACDYLIKPIRDEELKN 136
                         *****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.84E-3525150IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.6E-4125149No hitNo description
SMARTSM004482.8E-2926138IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.29227142IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.1E-2328136IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.32E-2240141No hitNo description
PROSITE profilePS5129410.655208267IPR017930Myb domain
SuperFamilySSF466891.42E-19208268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-29209269IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-24211264IPR006447Myb domain, plants
PfamPF002499.4E-7213262IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MVSMSGEVAT CKSEDTVVTD HFPVGLRVLV VDDDVVCLRI IEQMLRRCKY SVTTCTQAMV  60
ALNLLREKRG TFDIVLSDVH MPDMDGFKLL ELVGLEMDLP VIMMSGDGRT NLVMRGVQHG  120
ACDYLIKPIR DEELKNIWQH VVRKRYNSSK EPECSGSLDD NDRYRRRSDD AECASSVIEG  180
ADGVLKPQKK KREAKEDDTE MENDDPSTTK KPRVVWSVEL HQQFVSAVNQ LGIDKAVPKR  240
ILELMNVPGL TRENVASHLQ KFRLYLKRLS GVVQQQGGLP STFCGPIEQN SELGSLGRFD  300
IQALAASGQI PPETLTALHA ELLGRSTSNL VLPAVEQQNL VQVSLQQAKC IPVDQVMAYG  360
QPLLKCPASI SNSKHLSQAI LSAEDVHSGF GSQRAKNICM VPSSNPIAPN SNMLTAMMQQ  420
QQWQKQQQIE LQHRQSGPPE VNRSINVQPS CLVLPSQLPG HFQVGDSPAS ISRAGSLSKS  480
SVIDYGVLSP QSNNSSGVVQ VLDRELKPEC GLNRLPSGGS LSRSCSINAD NSVDLQLHNS  540
SSAFGSSKQL PGLIPSRLGS PVPYCINSSQ VLDQGRMKGA SIPSRFAVDE SDSPMCNFNT  600
AKIYLEETKV KQEPNMNVME NAKVGPAIFQ KFQPGDLMSV FRLSFARVKV SSSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-22207270164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236929.10.0two-component response regulator ARR14 isoform X2
SwissprotA2XE311e-146ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-146ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A3Q7FVW70.0A0A3Q7FVW7_SOLLC; Uncharacterized protein
STRINGSolyc04g008050.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77492130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-105response regulator 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]