PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g007430.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 185aa    MW: 20674 Da    PI: 9.7113
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g007430.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.8e-124187455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        +h+++ErrRR +i +++  L +l+P++      K + a++L +A+++I+ Lq
  Sopim04g007430.0.1 41 MHKMNERRRRYKIAKKMKVLETLIPNC-----NKSDRASVLDQAIQHIQALQ 87
                        7*************************8.....699****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.08E-113591No hitNo description
SuperFamilySSF474591.57E-153699IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.4493786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-154197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-94187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-114392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MLARFGVCYV AEIETNNGSG ITSRRNEDGL YQYPKASCVE MHKMNERRRR YKIAKKMKVL  60
ETLIPNCNKS DRASVLDQAI QHIQALQHQI QVMSMDRIRG STLVAAGRNQ IMQSTLHFNP  120
YIGAIGYFFN FSNILCSNFS PMLSTGSEFP FLPLAVACNL LHPGPIMEVF TRGSASVAPL  180
EKRV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14550ERRRRY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755161e-157HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015170292.11e-111PREDICTED: transcription factor PIF5-like isoform X4
TrEMBLM1A5X81e-110M1A5X8_SOLTU; Uncharacterized protein
STRINGSolyc04g007430.1.11e-136(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1524888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-12phytochrome interacting factor 3