PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

RAV

Protein Properties

Length: 373aa MW: 42221.9 Da PI: 9.5267

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim04g007000.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	42.9	1.2e-13	65	113	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f +eeAa+a++ a+++++g Sopim04g007000.0.1 65 SKFKGVVPQP-NGRWGAQIYEK-----HQRIWLGTFNGEEEAARAYDIAAQRFRG 113 79**9888.8*****3.....5***********************98 PP
2	B3	93	2.1e-29	203	296	1	85
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+kv tpsdv+k++rlv+pk++ae++ + ++ +++ l +ed +g+ W+++++y+++s++yvltkGW+++vk+++Lk+gD+v F Sopim04g007000.0.1 203 FEKVVTPSDVGKLNRLVIPKQHAERYfplvakvnkNDNTSKGVLLNFEDMNGKMWRFRYSYWNSSQSYVLTKGWSRYVKEKKLKAGDIVSF 293 99***************************9999778889************************************************ PP EE- CS B3 83 kld 85 k+ Sopim04g007000.0.1 294 KRC 296 *43 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.6E-8	65	113	IPR001471	AP2/ERF domain
CDD	cd00018	6.40E-27	65	120	No hit	No description
SuperFamily	SSF54171	1.57E-17	65	121	IPR016177	DNA-binding domain
PROSITE profile	PS51032	20.047	66	121	IPR001471	AP2/ERF domain
SMART	SM00380	2.0E-28	66	127	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.5E-20	66	121	IPR001471	AP2/ERF domain
Gene3D	G3DSA:2.40.330.10	6.0E-38	196	298	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.83E-29	201	296	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.19E-26	202	295	No hit	No description
PROSITE profile	PS50863	13.719	203	310	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.5E-27	203	297	IPR003340	B3 DNA binding domain
SMART	SM01019	5.5E-20	203	311	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MEVSCIDQEI STTSDSPSTI SPAGSPRQMG SGVSVVTDAD STNGVEAESK NTTITNNNNN 60 KLPSSKFKGV VPQPNGRWGA QIYEKHQRIW LGTFNGEEEA ARAYDIAAQR FRGRDAVTNF 120 KPLFDFQTEE IEISFLNSRS KVEIVEMLRK HTYNDELQHA KKVYNNNTFE MNGRSTCHTN 180 TNIATFSLDT NEKVANIASE LLFEKVVTPS DVGKLNRLVI PKQHAERYFP LVAKVNKNDN 240 TSKGVLLNFE DMNGKMWRFR YSYWNSSQSY VLTKGWSRYV KEKKLKAGDI VSFKRCSGVE 300 IEDKLLIDSK NRIIRGEQVK MVRLFGVNIC KVQDVSNNVV VEKNMSVGKR MREMELLAFE 360 CSKKQRVIID AL*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MEVSCIDQEI STTSDSPSTI SPAGSPRQMG SGVSVVTDAD STNGVEAESK NTTITNNNNN  60
KLPSSKFKGV VPQPNGRWGA QIYEKHQRIW LGTFNGEEEA ARAYDIAAQR FRGRDAVTNF  120
KPLFDFQTEE IEISFLNSRS KVEIVEMLRK HTYNDELQHA KKVYNNNTFE MNGRSTCHTN  180
TNIATFSLDT NEKVANIASE LLFEKVVTPS DVGKLNRLVI PKQHAERYFP LVAKVNKNDN  240
TSKGVLLNFE DMNGKMWRFR YSYWNSSQSY VLTKGWSRYV KEKKLKAGDI VSFKRCSGVE  300
IEDKLLIDSK NRIIRGEQVK MVRLFGVNIC KVQDVSNNVV VEKNMSVGKR MREMELLAFE  360
CSKKQRVIID AL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	2e-49	200	312	5	113	B3 domain-containing transcription factor NGA1
5os9_B	2e-49	200	312	5	113	B3 domain-containing transcription factor NGA1
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269\|PubMed:15040885, ECO:0000269\|PubMed:9862967}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269\|PubMed:15040885}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU164416	0.0	EU164416.1 Solanum lycopersicum RAV1 gene, promoter region and complete cds.
GenBank	HG975516	0.0	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004236999.1	0.0	AP2/ERF and B3 domain-containing transcription factor RAV1
Swissprot	Q9ZWM9	1e-123	RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBL	E1U2K4	0.0	E1U2K4_SOLLC; RAV1
STRING	Solyc04g007000.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2958	24	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13260.1	1e-122	related to ABI3/VP1 1

Publications ? help Back to Top
Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S RAV genes: regulation of floral induction and beyond. Ann. Bot., 2014. 114(7): p. 1459-70 [PMID:24812253] Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering. Plant Sci., 2015. 241: p. 78-95 [PMID:26706061] Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development. PLoS Genet., 2016. 12(2): p. e1005833 [PMID:26829043] Zhao Y, et al. ABA receptor PYL9 promotes drought resistance and leaf senescence. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54 [PMID:26831097]