 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopim04g005800.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 298aa MW: 34496.2 Da PI: 5.587 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim04g005800.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 54.8 | 1.6e-17 | 81 | 134 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++ ++q+e Le+ Fe ++++ e++ +LAk++gL+ rqV +WFqNrRa+ k
Sopim04g005800.0.1 81 KKRRLLPKQVEYLEKSFEVENKLEPERKVQLAKETGLQPRQVAIWFQNRRARCK 134
45577899********************************************99 PP
|
| 2 | HD-ZIP_I/II | 120.8 | 6.9e-39 | 80 | 171 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
ekkrrl +qv+ LE+sFe e+kLeperKv+la+e glqprqva+WFqnrRAR ktkq+Ekdy++Lk+++d+lk++ + L ke+ +Lr+e+
Sopim04g005800.0.1 80 EKKRRLLPKQVEYLEKSFEVENKLEPERKVQLAKETGLQPRQVAIWFQNRRARCKTKQIEKDYDVLKASFDELKTQYDCLFKENGSLRNEV 170
69**************************************************************************************998 PP
HD-ZIP_I/II 92 k 92
+
Sopim04g005800.0.1 171 H 171
6 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 298 aa
Download sequence Send
to blast |
MEVARVHEGS NNGFILPNEI LPPTSNWISN SSSIFHGSVS MVNFDQDRVQ KSKKRSFLAQ 60
LDQDDSSSND DNYNYHHQSE KKRRLLPKQV EYLEKSFEVE NKLEPERKVQ LAKETGLQPR 120
QVAIWFQNRR ARCKTKQIEK DYDVLKASFD ELKTQYDCLF KENGSLRNEV HLLKEKLINR 180
VKGKEILEFI SPLDHVEPQN PSIGVDSNLA MVKCKQEDAK SDVLDSDSPR FTDGDYTSYL 240
EPADSSNVFQ TEHSNFSREN DTLCFPKLEE HHHHDDLPVN SCNLGFQIED QSWFSHY*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 128 | 136 | RRARCKTKQ |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | CU280045 | 0.0 | CU280045.2 S.lycopersicum DNA sequence from clone SL_MboI-98C7 on chromosome 4, complete sequence. |
| GenBank | HG975516 | 0.0 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
