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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim04g005280.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 316aa MW: 35503.8 Da PI: 8.9058 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.4 | 1.7e-15 | 31 | 80 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P+ ++K + a+ L ++++Y+++Lq Sopim04g005280.0.1 31 RSKHSVTEQRRRSKINERFQILRDLIPHT----DQKRDTASFLLEVIQYVQYLQ 80 899*************************8....8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.49E-18 | 27 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-21 | 28 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.828 | 29 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.40E-13 | 31 | 84 | No hit | No description |
Pfam | PF00010 | 7.4E-13 | 31 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-11 | 35 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MRLVLLRRMP HLLAVIPKVY GKSNEKASAL RSKHSVTEQR RRSKINERFQ ILRDLIPHTD 60 QKRDTASFLL EVIQYVQYLQ EKVQKYEGPY QPWSSEPTKL MPWRNSHWRM QSLPAQPHAL 120 KNGSGPESTY LGRFDENLAT VTSTMQPNQQ NPIESHTSRD VSFKALDQQN ELANKSITTP 180 IPLQAGMKMS VPNNSAFSEP QPRPVSDQCP NTIDALNHDE DDVIDGGRIS LSSSYSQGFL 240 TSLSQALQST GLDLSKATIS VQIDFGKRAN QAMTSGPSIA KDDENPTLSG HQHTDHFREA 300 SNDEDMNQAQ KRLKI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00219 | DAP | Transfer from AT1G69010 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975516 | 0.0 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010319480.1 | 0.0 | transcription factor BIM2-like isoform X2 | ||||
Refseq | XP_019068770.1 | 0.0 | transcription factor BIM2-like isoform X1 | ||||
Swissprot | Q9CAA4 | 2e-91 | BIM2_ARATH; Transcription factor BIM2 | ||||
TrEMBL | M0ZP14 | 0.0 | M0ZP14_SOLTU; Uncharacterized protein | ||||
STRING | Solyc04g005280.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4426 | 23 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 9e-94 | BES1-interacting Myc-like protein 2 |
Publications ? help Back to Top | |||
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