![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim03g123500.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
ERF |
Protein Properties |
Length: 387aa MW: 42870.2 Da PI: 4.8073 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim03g123500.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Spi&pid=Sopim03g123500.0.1) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 59.8 | 6.4e-19 | 115 | 164 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAaka++ +++++g
Sopim03g123500.0.1 115 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAAKAYDIEARRIRG 164
69*******.**********954...4************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0070483 | Biological Process | detection of hypoxia |
GO:0005634 | Cellular Component | nucleus |
GO:0005886 | Cellular Component | plasma membrane |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 387 aa
Download sequence Send
to blast |
MCGGSIISDY IDPSRTSRRL TAEFLWGRFD LGKKQKNPNN YHSKAKHLRS EVVDDFEADF 60 QDFKELSDDE DVQVDVKPFA FSASKHSTGS KSLKTVDSDK DAAADKSSKR KRKNQYRGIR 120 QRPWGKWAAE IRDPRKGVRV WLGTFNTAEE AAKAYDIEAR RIRGKKAKVN FPDEAPAPAS 180 RHTVKVNPQK VLPEESLYSL QSDSAIMNSV EDDHYDSFGF FEEKPMTKQY GYENGSSASA 240 DTGFGSFVPS AGGDIYFNSD VGSNSFECSD FGWGEPCSRT PEISSVLSAA IECNEAQFVE 300 DANSQKKLKS CTNNPVADDG NTVTMVPEEL PAFEPQMNFF HLPYMEGNWD ASGGNFLNTS 360 ATQNGGENAM DLWSFDDVPS LMGGIF*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT013179 | 0.0 | BT013179.1 Lycopersicon esculentum clone 134255R, mRNA sequence. |