PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g121240.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 381aa    MW: 42288.3 Da    PI: 5.0315
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g121240.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.55e-08293333954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  Sopim03g121240.0.1 293 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 333
                         69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.332284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-14289345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-13290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-12292342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-5293333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.78E-5306338No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MENLDWNETP FNFGSSFDPI HVISNWNMPQ RQEAANRLAA DSMAAKAGAA DLTRDCTDIA  60
FSSSPILNMP NNYITDNNPL GLMSDFGVEI AKPISNTVSL ESIDCLLSAT TTNNTDTSIE  120
DDGMSVIFAD SNSLWNSGES AGINPQLLNC LPTDHKILEE EQNQRKRKSY ELDEAVSQSS  180
LGNSSNEFNL FQSNSLGDCG NFQLISEKQS KSKKMRLIES SNKRPSSSNI NFQQASSSVS  240
SIDQEPDPEA IAQMKEMIYR AAAFRPVDFG AEVLEKPKRK NVKISTDPQT VAARQRRERI  300
SERIRVLQRL VPGGSKMDTA SMLDEAANYL KFLRTQVKAL EAIGQKQDPF TSITQFNYPI  360
PMQLPHFPLQ NPNQIHRPKS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168QRKRKS
2293298RQRRER
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2384470.0AC238447.1 Solanum lycopersicum chromosome 3 clone C03HBa0079K08, complete sequence.
GenBankAC2384650.0AC238465.1 Solanum lycopersicum chromosome 3 clone C03HBa0241F16, complete sequence.
GenBankEU1247300.0EU124730.2 Solanum lycopersicum chromosome 3 clone C03HBa0001E24, complete sequence.
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235627.10.0transcription factor bHLH87
RefseqXP_010318521.10.0transcription factor bHLH87
SwissprotQ8S3D26e-79BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A3Q7FX640.0A0A3Q7FX64_SOLLC; Uncharacterized protein
STRINGSolyc03g121240.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43502242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-70bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]