PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim03g120530.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 293aa MW: 32236.6 Da PI: 7.1298 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.2 | 0.00017 | 188 | 226 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Sopim03g120530.0.1 188 RKEKLGDRITALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 226 6677889999999999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.46E-7 | 172 | 230 | No hit | No description |
PROSITE profile | PS50888 | 11.566 | 176 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-8 | 186 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.24E-11 | 186 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MHPHESHELS SSTTTTQHFY GSSNFLADNN PSQDHLPRSW SQLLLSGLSC DQEKPDISDH 60 FQHQYKKLEN WEEIQNLNSI HNNNIIPSNS SFRVPIFDVK PEELVSQRLY SNYHHDLSPA 120 SSCVTTNLNH NNIFNFSSSP ANKITNSNKV VEVKHQDHSS ECNSTSNGGV TKKARVQHSS 180 AQPSLKVRKE KLGDRITALH QLVSPFGKTD TASVLSEAIG YIRFLQAQIQ ALSSPYMGNV 240 AGSMGHTQQQ SADLRSRGLC LVPISCTQHV GSDNNNTVGD YWAPALGGGG YL* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004235685.1 | 0.0 | transcription factor bHLH68 | ||||
TrEMBL | M0ZRY8 | 0.0 | M0ZRY8_SOLTU; Uncharacterized protein | ||||
STRING | Solyc03g120530.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1519 | 22 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29100.1 | 3e-49 | bHLH family protein |