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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim03g119770.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TCP | ||||||||
Protein Properties | Length: 347aa MW: 39325.3 Da PI: 8.9961 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 127.8 | 1.1e-39 | 111 | 259 | 3 | 137 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssaseceae 76 kkdrhski T+ g+RdRR+Rls+e+a++fF Lqd LGfdk+skt+eWLl+++k a+ +l++ ss+sa++ce Sopim03g119770.0.1 111 SKKDRHSKINTAHGPRDRRMRLSLEIARKFFNLQDLLGFDKASKTVEWLLTKSKSAVNDLVQKinkdkcsgsenpniatvSSPSAESCEVI 201 79*************************************************************9999988888887777777777777333 PP TCP 77 sssssasnsssgkaaksaakskksqksaasalnlakesrakarararertrekmriknkln 137 ++s +++ ++ +k+++k+ ks ++a + +akesr++arararert k+++++++n Sopim03g119770.0.1 202 DESAATN---TAETQKQQKKKVKSIRRAIIHPVVAKESRKEARARARERTIIKKSLNDNTN 259 3333333...33555555566677777777899999*************988888776655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.4E-43 | 111 | 252 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.256 | 112 | 170 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.321 | 234 | 251 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MYPSSNYSPN ISSSSSFFHI NIPSPSMQYE PEFIQYFHDF QFIQPSYDQN TNIPAEEAAD 60 SDKLDKIEED QSIIKSCNNN KKDEKSSSST STIRRKNNKR TTSGSAGVGP SKKDRHSKIN 120 TAHGPRDRRM RLSLEIARKF FNLQDLLGFD KASKTVEWLL TKSKSAVNDL VQKINKDKCS 180 GSENPNIATV SSPSAESCEV IDESAATNTA ETQKQQKKKV KSIRRAIIHP VVAKESRKEA 240 RARARERTII KKSLNDNTNN NNNGDQSMAD EDLTRSLRSW NTTFEDHQSG IQGYNNNNNM 300 NVVDNFNLVD TSNWSPFMFN YHQINTEISQ EHQFANFQYS GKLWEA* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ496327 | 0.0 | GQ496327.1 Solanum lycopersicum TCP transcription factor 9 (TCP9) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001233802.2 | 0.0 | TCP transcription factor BRC1a | ||||
TrEMBL | F6KB98 | 0.0 | F6KB98_SOLLC; BRANCHED1A isoform 1 | ||||
STRING | Solyc03g119770.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2482 | 22 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 7e-27 | TCP domain protein 12 |