PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g119390.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 271aa    MW: 30727.5 Da    PI: 5.7704
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g119390.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.54.8e-08151198455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  Sopim03g119390.0.1 151 SHSLAERVRRGKINERLRCLQDIVPGC----YKTMGMAGMLDEIINYVQSLQ 198
                         8*************************8....35599999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.64E-9145202No hitNo description
SuperFamilySSF474595.5E-16145215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15147209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.027147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-5151198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-8153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MADHQFNSDI QNFITNSPFS LLNFDSSVDL MNQFPDMMTI PCSSDMSSFN IQSSMEFSND  60
NVFTQVNDQF PGSLQEIFQG NIQQESKNEE INDSKKRKIS DTPESSSASA TGNKRRNTKG  120
RGNRVKVDEK EEEKPREVVH VRAKRGQATD SHSLAERVRR GKINERLRCL QDIVPGCYKT  180
MGMAGMLDEI INYVQSLQNQ VEFLSMKLTA ASSYYDFNSE SDILVSLQRA KAYEALKMQK  240
MMKKEIECEV MSTNQVGLHF GSYPMLPYNT *
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235809.10.0transcription factor BEE 3
SwissprotQ8GWK72e-62BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A3Q7FUH20.0A0A3Q7FUH2_SOLLC; Uncharacterized protein
STRINGSolyc03g119390.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39712344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.11e-61BR enhanced expression 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]