PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g116410.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 178aa    MW: 19517.6 Da    PI: 8.9843
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g116410.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.23.3e-09729325
                        S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH  3 telCrffartGtCkyGdrCkFaH 25
                        +++C +f+r G C+yG+rC++ H
  Sopim03g116410.0.1  7 RPICTRFQRWGNCSYGERCRYVH 29
                        799******************** PP
2zf-CCCH35.31.9e-1193118227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         kt+lC+ + r G C +G+rC+FaHg+
  Sopim03g116410.0.1  93 KTRLCNSWERDGSCFFGARCQFAHGR 118
                         9***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.54432IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-4531IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6729IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-6831IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-6930IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-990122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-1491122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.97191119IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-591118IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-893118IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MAQEGNRPIC TRFQRWGNCS YGERCRYVHT AGGSTYGPLQ GGGYDQSYVE EGKSAYRESA  60
AITIVSGGNE VKNKSYSDNV EPKSSVDFRT RMKTRLCNSW ERDGSCFFGA RCQFAHGRAE  120
LQGYGSSNPL VSSSNAGISA PAKKVAPNEV GSSAPAERRF KWNDVRKISQ VYGDWIE*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1247420.0EU124742.1 Solanum lycopersicum chromosome 3 clone C03HBa0323D22, complete sequence.
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068280.11e-130zinc finger CCCH domain-containing protein 12-like isoform X1
TrEMBLA0A3Q7FUD91e-130A0A3Q7FUD9_SOLLC; Uncharacterized protein
STRINGSolyc03g116410.1.11e-129(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA130261320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-17C3H family protein