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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim03g115540.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 440aa MW: 48315 Da PI: 7.102 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.1 | 2.5e-16 | 237 | 283 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L++l+P+a K +Ka++L ++++Y+k+Lq Sopim03g115540.0.1 237 VHNQSERRRRDRINQRMKALQRLVPNA-----SKTDKASMLDEVIDYLKQLQ 283 6*************************9.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 4.6E-19 | 231 | 302 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.057 | 233 | 282 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.19E-19 | 236 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.7E-14 | 237 | 283 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.16E-10 | 238 | 287 | No hit | No description |
SMART | SM00353 | 3.4E-17 | 239 | 288 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MSHCTVPTWN PSYQRQEHVV EAEEANKYPH LHNQQIQINH LLPMSSKCEE VAELTWEKGQ 60 LGMHGLGGIL SISQAKQTLG RTGDTLESIV HQATYHAKNQ TSIHQNYAQN EDQDLKTGVL 120 YSGGKWGESS QQMAPPRATV LAKKRMRPSE SDPQYGGAED HEYAEGSACA SASATFYREN 180 DTTMVTWPSF DESSRSIKSK TACDEDSACH GGGSENKEEE HETKRSNSSR RSRAAAVHNQ 240 SERRRRDRIN QRMKALQRLV PNASKTDKAS MLDEVIDYLK QLQAQVQLMS STPRNMAPQM 300 MMPLGMHQHI QMSLLARMGV GVGLGMGMGM FDMTALARAA AASATTHPNQ MTTAPINIPF 360 TPSGAFALPA APANSVSPAS ATTSTTTNSI PFTNPYSAFL PQSMDMEFFN NMAALYRQQL 420 ANQSTQITGS KLNQENQTE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 241 | 246 | ERRRRD |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238568 | 0.0 | AC238568.1 Solanum lycopersicum chromosome 3 clone C03HBa0071P11, complete sequence. | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004236485.1 | 0.0 | transcription factor UNE10 | ||||
TrEMBL | A0A3Q7FTV7 | 0.0 | A0A3Q7FTV7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g115540.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5437 | 17 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 1e-35 | bHLH family protein |