PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim03g114400.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-YB | ||||||||
Protein Properties | Length: 133aa MW: 14869.7 Da PI: 4.2645 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 54.6 | 2.6e-17 | 2 | 67 | 21 | 86 |
NF-YB 21 lPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 lP + ++++d+++++ ec +efi +++se+++ c+re+++ti+++ +l al lGf +y e++ + Sopim03g114400.0.1 2 LPPDVRVARDTQDLLIECCVEFINLISSESNEVCNREDKRTIAPEHVLKALEVLGFGEYTEEVYAA 67 8999********************************************************988654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.7E-28 | 2 | 112 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.13E-24 | 3 | 112 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.3E-14 | 4 | 52 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MLPPDVRVAR DTQDLLIECC VEFINLISSE SNEVCNREDK RTIAPEHVLK ALEVLGFGEY 60 TEEVYAAYEQ HKLETVDTVR AGKLSNNIAE MTEEEALAAQ QRMFAEARAR MNGVGTVPPK 120 QQDPETEQKL DC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 8e-29 | 4 | 108 | 30 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 8e-91 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004236100.1 | 3e-94 | protein Dr1 homolog | ||||
Refseq | XP_010318905.1 | 3e-94 | protein Dr1 homolog | ||||
Refseq | XP_015067469.1 | 7e-94 | protein Dr1 homolog isoform X1 | ||||
Refseq | XP_015067470.1 | 3e-94 | protein Dr1 homolog isoform X2 | ||||
Refseq | XP_027771652.1 | 7e-94 | protein Dr1 homolog isoform X1 | ||||
Refseq | XP_027771653.1 | 3e-94 | protein Dr1 homolog isoform X2 | ||||
Swissprot | P49592 | 3e-65 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A3Q7FRD5 | 7e-93 | A0A3Q7FRD5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g114400.2.1 | 2e-93 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3820 | 22 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 2e-69 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
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