PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim03g114230.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 181aa MW: 20791.2 Da PI: 9.3578

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim03g114230.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.6	5.9e-05	12	62	6	54
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-..STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskK..lsKaeiLekAveYIksL 54 + E++RR +++ ++L +l+P+ +++s K ++ + +A+ YI +L Sopim03g114230.0.1 12 KTQEKNRRIQMKYLSSKLFSLIPPHHHQYSAKdmVTQQDQIDQAITYIEKL 62 578*******************76788888789***********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.54E-7	8	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.4E-6	11	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MENTSPEKLD RKTQEKNRRI QMKYLSSKLF SLIPPHHHQY SAKDMVTQQD QIDQAITYIE 60 KLKERVDVLM RRKDKIIAQG TSDDSKKFMP STSCSNIKLP MIEVRELGST IEVILVSCLQ 120 KKFTMQEVII ILEEEGVQVV TANFSTIGDK VYYTIHAQVK ITRLGVDASR VYLRLQNLIC 180 *

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975515	0.0	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010318915.1	1e-131	transcription factor bHLH162-like isoform X1
TrEMBL	A0A3Q7FR92	1e-129	A0A3Q7FR92_SOLLC; Uncharacterized protein
STRING	Solyc03g114230.1.1	1e-130	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6083	14	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	3e-28	bHLH family protein