PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim03g114230.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 181aa MW: 20791.2 Da PI: 9.3578 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.6 | 5.9e-05 | 12 | 62 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-..STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskK..lsKaeiLekAveYIksL 54 + E++RR +++ ++L +l+P+ +++s K ++ + +A+ YI +L Sopim03g114230.0.1 12 KTQEKNRRIQMKYLSSKLFSLIPPHHHQYSAKdmVTQQDQIDQAITYIEKL 62 578*********************76788888789*************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.54E-7 | 8 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.4E-6 | 11 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MENTSPEKLD RKTQEKNRRI QMKYLSSKLF SLIPPHHHQY SAKDMVTQQD QIDQAITYIE 60 KLKERVDVLM RRKDKIIAQG TSDDSKKFMP STSCSNIKLP MIEVRELGST IEVILVSCLQ 120 KKFTMQEVII ILEEEGVQVV TANFSTIGDK VYYTIHAQVK ITRLGVDASR VYLRLQNLIC 180 * |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010318915.1 | 1e-131 | transcription factor bHLH162-like isoform X1 | ||||
TrEMBL | A0A3Q7FR92 | 1e-129 | A0A3Q7FR92_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g114230.1.1 | 1e-130 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6083 | 14 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 3e-28 | bHLH family protein |