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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim03g114220.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 243aa MW: 28136.4 Da PI: 4.8783 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 33.2 | 1.6e-10 | 12 | 89 | 43 | 128 |
NAM 43 ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Pw++ ++ eek yf ++ +k++++ +r +r+ ++g+W+ + +++ +vg k+ L f ++++g++ +W+m ey++ Sopim03g114220.0.1 12 PPWEIF-GANYEEKFRYFITPLKKQKTEYTRFSRICAKGTWQGQTGNRTA-----PVVGFKRNLKFK--TSERGQNNTWLMVEYHV 89 689996.555567788*************************955554444.....459********8..789999*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 17.004 | 1 | 113 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.49E-14 | 11 | 112 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-7 | 12 | 89 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MNYVLSIYED QPPWEIFGAN YEEKFRYFIT PLKKQKTEYT RFSRICAKGT WQGQTGNRTA 60 PVVGFKRNLK FKTSERGQNN TWLMVEYHVA DSFFKENNHI PKEDFVVCRI KKNKKGKEKN 120 VDHVMEAQDG DVVGIIDPML LEPNHNNDYS TREDQVRVCD AVEATTTEFD IQNSTYEATT 180 TEKKETALEV QEGHGVDDIR SNELQEEMYR AFDDIPFELV VEFTRSTTYI IHINSSLDGL 240 CS* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025886102.1 | 0.0 | uncharacterized protein LOC104646647 | ||||
TrEMBL | A0A3Q7FSG0 | 0.0 | A0A3Q7FSG0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g114220.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA814 | 13 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 8e-11 | NAC family protein |