PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim03g113120.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

WRKY

Protein Properties

Length: 525aa MW: 58168.3 Da PI: 7.081

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim03g113120.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.8	2.9e-30	235	294	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+ +d +++++tYeg+Hnh+ Sopim03g113120.0.1 235 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApNCPVRKQVQRCIQDMSILITTYEGTHNHP 294 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.6E-31	221	296	IPR003657	WRKY domain
SuperFamily	SSF118290	2.88E-27	227	296	IPR003657	WRKY domain
PROSITE profile	PS50811	28.242	230	296	IPR003657	WRKY domain
SMART	SM00774	1.5E-36	235	295	IPR003657	WRKY domain
Pfam	PF03106	7.6E-27	236	294	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence Send to blast
METVFRKSTH GGVVKQDIKI KASEEGFVED INDLKVEKER KSIHNEDDNS KSSQQKDLTG 60 DKKDDQLESA KADMEEVMEE NQRLKKHLDK IMKDYRNLQM QFHEVAQRDA EKTNTDVKHD 120 EAELVSLSLG RTSSDTKKEL SKLILSKKEN DEKEEDNLTL ALDCKFQSST KSSPSNLSPE 180 NSLGEVKDDE KGTDQTWPPH KVLKTIRNEE DDVTQQNPTK RAKVSVRVRC DTPTMNDGCQ 240 WRKYGQKIAK GNPCPRAYYR CTVAPNCPVR KQVQRCIQDM SILITTYEGT HNHPLPHSAT 300 SMAFTTSAAA SMLLSGSSSS GSGPTSSTAS ATTSALNYCF SDNSKPNPFY NLPHSSISSS 360 SHSQYPTITL DLTSNSSTSS FPGQNYRTIA NSNNYPPRYN NNNSSTNILN FSSFESNHLL 420 PMSWSNRNNQ DTHSQSYLQN NIKSAASTQT LLPQDTIAAA TKAITSDPKF QSALAVALTS 480 IIGSRSGNHH IDEKSGQNMK VTEPFPVLCS FPSTSPGDHK DYTL*

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence Send to blast

METVFRKSTH GGVVKQDIKI KASEEGFVED INDLKVEKER KSIHNEDDNS KSSQQKDLTG  60
DKKDDQLESA KADMEEVMEE NQRLKKHLDK IMKDYRNLQM QFHEVAQRDA EKTNTDVKHD  120
EAELVSLSLG RTSSDTKKEL SKLILSKKEN DEKEEDNLTL ALDCKFQSST KSSPSNLSPE  180
NSLGEVKDDE KGTDQTWPPH KVLKTIRNEE DDVTQQNPTK RAKVSVRVRC DTPTMNDGCQ  240
WRKYGQKIAK GNPCPRAYYR CTVAPNCPVR KQVQRCIQDM SILITTYEGT HNHPLPHSAT  300
SMAFTTSAAA SMLLSGSSSS GSGPTSSTAS ATTSALNYCF SDNSKPNPFY NLPHSSISSS  360
SHSQYPTITL DLTSNSSTSS FPGQNYRTIA NSNNYPPRYN NNNSSTNILN FSSFESNHLL  420
PMSWSNRNNQ DTHSQSYLQN NIKSAASTQT LLPQDTIAAA TKAITSDPKF QSALAVALTS  480
IIGSRSGNHH IDEKSGQNMK VTEPFPVLCS FPSTSPGDHK DYTL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-20	235	296	14	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU017421	0.0	GU017421.1 Solanum lycopersicum WRKY72 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001234802.2	0.0	WRKY transcription factor 72a
Swissprot	A0A3Q7GFB5	0.0	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	M1BJA0	0.0	M1BJA0_SOLTU; Uncharacterized protein
STRING	Solyc03g113120.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1945	24	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	1e-59	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]