PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim03g111460.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-YC | ||||||||
Protein Properties | Length: 289aa MW: 31929.2 Da PI: 8.2021 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 133.9 | 4.8e-42 | 43 | 145 | 1 | 100 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 ql+ fw++q i + df+ h+lP++rikki+k+d++v+misae+P+ll+kace+fi elt rswl+a+e++r+tlkk d+++++++t+ Sopim03g111460.0.1 43 QLRLFWAAQlqeIIQIRDFRGHSLPISRIKKIMKSDKEVRMISAESPILLAKACEIFIQELTHRSWLKAQECQRQTLKKIDLFTVLKETEL 133 79******966666889************************************************************************** PP NF-YC 89 fdflvdivprde 100 fdflvd++ de Sopim03g111460.0.1 134 FDFLVDVISMDE 145 *******99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.53E-23 | 53 | 137 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.2E-17 | 65 | 126 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 3.4E-28 | 66 | 141 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MASHSDPVAA NAEVAAVVNA EEEVAEATAQ PIVNANDYLL QQQLRLFWAA QLQEIIQIRD 60 FRGHSLPISR IKKIMKSDKE VRMISAESPI LLAKACEIFI QELTHRSWLK AQECQRQTLK 120 KIDLFTVLKE TELFDFLVDV ISMDEPEEEA PTYVPGMLGN IPNRISYYYS PMGPPAPPMA 180 PLTPSVRPPA PSMGPPAPSM PTSPRGIMGR RAMPWVAPSM HVPPPLYPRK FGWYAAGGNP 240 YLKVMPLLIQ MLSGTGTTEA LSGMMEPPRL IGYRMISKPS GAIWRSGH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-31 | 51 | 141 | 3 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025886122.1 | 1e-175 | nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q9SMP0 | 8e-45 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A3Q7FNU8 | 1e-140 | A0A3Q7FNU8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g111460.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15807 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 3e-42 | nuclear factor Y, subunit C1 |
Publications ? help Back to Top | |||
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