PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g111450.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YC
Protein Properties Length: 319aa    MW: 35307.2 Da    PI: 4.4384
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g111450.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC135.91.1e-42811841101
               NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         q++ fw+ q   ie++ dfk+h++P++rik+i+k++++  ++sae+P+l+skacelf+leltlrsw ha++n+r +lkk+d aaa+ rt++
  Sopim03g111450.0.1  81 QMRIFWNCQreeIEEMDDFKHHHFPISRIKRIIKSENNAIKLSAETPILFSKACELFVLELTLRSWFHAQQNNRGSLKKTDFAAAIRRTEV 171
                         79*****997779999*************************************************************************** PP

               NF-YC  89 fdflvdivprdel 101
                         fdfl d+vp+de+
  Sopim03g111450.0.1 172 FDFLADVVPEDEI 184
                         **********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.35E-2290190IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.3E-26104181IPR009072Histone-fold
PfamPF008082.1E-11104166IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MENNDQQPME INQQQPMENN DQQAMEINQQ QPMENNDQQP MEINQQQPVE PLYPGYPFYQ  60
MLLHQQHQQL QLQLQQQVEE QMRIFWNCQR EEIEEMDDFK HHHFPISRIK RIIKSENNAI  120
KLSAETPILF SKACELFVLE LTLRSWFHAQ QNNRGSLKKT DFAAAIRRTE VFDFLADVVP  180
EDEINEVATG FGPGMVGPTV GGGFPYFYPP MGLLAMPGVM PGGPAMLGVM PGGPAMLGPM  240
PGGPAMPGPM IGGPSMPGPM IGGPAVAVVA PSVYVQPPLQ AWQPAGDNPN AGGESDGQGG  300
IFLLFLRSDE GNVFRRRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B8e-3489180394NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351461.11e-130PREDICTED: nuclear transcription factor Y subunit C-1-like
TrEMBLA0A3Q7FQY41e-177A0A3Q7FQY4_SOLLC; Uncharacterized protein
STRINGSolyc03g111450.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2082033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.19e-43nuclear factor Y, subunit C1