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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim03g111410.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 344aa MW: 38855.4 Da PI: 8.2509 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.4 | 3e-14 | 37 | 115 | 14 | 98 |
T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + l++p +fa++ ++ +k ++d sg +W v++ + ++g +++GW eF++ ++L +gD +vF++++r+ f +v++f+ Sopim03g111410.0.1 37 QVLIVPPNFARSAsHLV---DKVTLVKDASGLRWPVTV--CDYQGLLAIQQGWPEFASKHDLVVGDHLVFHYTQRQHF--TVQIFD 115 45899*****9995333...33456699**********..****99**************************999999..999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.9E-17 | 21 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-19 | 22 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.37E-13 | 24 | 115 | No hit | No description |
SMART | SM01019 | 1.9E-7 | 26 | 117 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.9E-12 | 28 | 115 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.547 | 39 | 117 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.30E-6 | 254 | 341 | No hit | No description |
SuperFamily | SSF101936 | 4.12E-7 | 269 | 335 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-5 | 273 | 337 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 7.754 | 276 | 343 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MESANVACDK CKKDCLLIHR KRVPSFYKAM TDKSCFQVLI VPPNFARSAS HLVDKVTLVK 60 DASGLRWPVT VCDYQGLLAI QQGWPEFASK HDLVVGDHLV FHYTQRQHFT VQIFDMNGYE 120 KIIFCCDTDK GEKRAATRVE ETTRAGDAQF DQDGRLCLHQ SRFEMPASKP PAEGLLPLRE 180 DGIKATGMVS RPAEDILLLG PKDKKCKKAS QFDSGEEEAN GNGKVNKSES AGLGDTPSFP 240 ANNYSSLVEI YGPDFLELPG SWRDLLQRPT RERWIIFLRG PDKRIWPTYY TSLLPPYYSR 300 RPSVDVLSRG WKEVAAAYGM NAKDHCLFEL ADKQNRIFDI RKI* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010319048.1 | 0.0 | uncharacterized protein LOC101263102 | ||||
Refseq | XP_025885819.1 | 0.0 | uncharacterized protein LOC101263102 | ||||
Refseq | XP_025885820.1 | 0.0 | uncharacterized protein LOC101263102 | ||||
Refseq | XP_025885821.1 | 0.0 | uncharacterized protein LOC101263102 | ||||
Refseq | XP_025885822.1 | 0.0 | uncharacterized protein LOC101263102 | ||||
TrEMBL | A0A3Q7FNT9 | 0.0 | A0A3Q7FNT9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g111410.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA20819 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53310.1 | 7e-10 | B3 family protein |