PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g098060.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ZF-HD
Protein Properties Length: 180aa    MW: 19951.9 Da    PI: 8.2899
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g098060.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer89.82.6e-28862456
         ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee..gtaaalkCaACgCHRnFHRre 56
                          Y+eCl+NhAaslG++a+DGCgEf+ +++++  g +++l+CaACgCHRnFHR+ 
  Sopim03g098060.0.1  8 DIYRECLRNHAASLGSYATDGCGEFTLDDTNTspGGSTSLNCAACGCHRNFHRKF 62
                        57************************99766656779****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.0E-23961IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.8851062IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.0E-231061IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-171061IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.4E-2891162IPR009057Homeodomain-like
SuperFamilySSF466891.45E-1693160IPR009057Homeodomain-like
TIGRFAMsTIGR015655.7E-27102160IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MQGDKSNDIY RECLRNHAAS LGSYATDGCG EFTLDDTNTS PGGSTSLNCA ACGCHRNFHR  60
KFSCGGSYSN NSSRDDREII AAHDYRLATT EESPAVSERS GKKRFRTKFT GDQKEKMLAF  120
AEKLGWTLQR KDEENETERF CREIGVSRKV FKVWMHNHKN NSSSVSSTVT GNNASSLTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-211031641878ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235372.11e-132zinc-finger homeodomain protein 9-like
TrEMBLM1D7H01e-129M1D7H0_SOLTU; Uncharacterized protein
STRINGSolyc03g098060.1.11e-132(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118652023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.26e-40homeobox protein 31