PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim03g097820.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 331aa MW: 36641 Da PI: 6.5135 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.2 | 1.7e-09 | 163 | 210 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Sopim03g097820.0.1 163 SHSLAERVRREKISERMKILQSLVPGC----DKVTGKALMLDEIINYVQSLQ 210 8*************************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.57E-17 | 157 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.16E-10 | 157 | 214 | No hit | No description |
PROSITE profile | PS50888 | 15.796 | 159 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.0E-17 | 159 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.9E-7 | 163 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-10 | 165 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MAAFSSHQLQ HNNPFLLDSV FLPTSPIKMS GFFEEPNNSC IVQQFYQQEF PSNLISHENS 60 FCLDPKSSSS ISLDMDASSV TDKIESGINN NKANVSPLDK KRKSSEGSSS MTSAHSKNEK 120 QGDNGKKKKI ISKLVAKDEK KANEEAPTGY IHVRARRGQA TDSHSLAERV RREKISERMK 180 ILQSLVPGCD KVTGKALMLD EIINYVQSLQ NQVEFLSMKL TSLNPMYYDF GMDLDALMVR 240 PDDQSLSGLE TQMANIQQGS TTTTSQAAEV IANTNSGYQF LDNSTSLMFQ QSHFPNSIPQ 300 GIGQLLWGAD EQTQKIINQS GFSNNFCSFH * |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ823169 | 0.0 | JQ823169.1 Solanum lycopersicum basic helix-loop-helix (bHLH1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001266190.2 | 0.0 | basic helix-loop-helix | ||||
Refseq | XP_010318148.1 | 0.0 | basic helix-loop-helix isoform X1 | ||||
TrEMBL | A0A3Q7FNJ7 | 0.0 | A0A3Q7FNJ7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g097820.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4116 | 23 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 1e-57 | bHLH family protein |