PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g097820.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 331aa    MW: 36641 Da    PI: 6.5135
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g097820.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.7e-09163210455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Sopim03g097820.0.1 163 SHSLAERVRREKISERMKILQSLVPGC----DKVTGKALMLDEIINYVQSLQ 210
                         8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-17157227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-10157214No hitNo description
PROSITE profilePS5088815.796159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-17159226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-7163210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10165215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAAFSSHQLQ HNNPFLLDSV FLPTSPIKMS GFFEEPNNSC IVQQFYQQEF PSNLISHENS  60
FCLDPKSSSS ISLDMDASSV TDKIESGINN NKANVSPLDK KRKSSEGSSS MTSAHSKNEK  120
QGDNGKKKKI ISKLVAKDEK KANEEAPTGY IHVRARRGQA TDSHSLAERV RREKISERMK  180
ILQSLVPGCD KVTGKALMLD EIINYVQSLQ NQVEFLSMKL TSLNPMYYDF GMDLDALMVR  240
PDDQSLSGLE TQMANIQQGS TTTTSQAAEV IANTNSGYQF LDNSTSLMFQ QSHFPNSIPQ  300
GIGQLLWGAD EQTQKIINQS GFSNNFCSFH *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8231690.0JQ823169.1 Solanum lycopersicum basic helix-loop-helix (bHLH1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001266190.20.0basic helix-loop-helix
RefseqXP_010318148.10.0basic helix-loop-helix isoform X1
TrEMBLA0A3Q7FNJ70.0A0A3Q7FNJ7_SOLLC; Uncharacterized protein
STRINGSolyc03g097820.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41162345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-57bHLH family protein