PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g097120.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 492aa    MW: 54029.6 Da    PI: 4.8657
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g097120.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.53.4e-36181102103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+++++++sws+++nsfvvl+  efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g k+
  Sopim03g097120.0.1  18 FLNKTYDMVDDPSTDSVVSWSKSNNSFVVLNVPEFARDILPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGYKH 99 
                         9****************************************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i r+k +
  Sopim03g097120.0.1 100 LLKSISRRKPS 110
                         ********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.2E-6014107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.3E-3815107IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.99E-3416107IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.0E-3118107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-201841IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-205668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-206981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MDGVHEATVA GNLTSPPFLN KTYDMVDDPS TDSVVSWSKS NNSFVVLNVP EFARDILPKY  60
FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGYKHL LKSISRRKPS QLQGHQQTTS  120
KVPNASVASC VEVGKFGIEE EVERLKRDKD VLMQELVKLR QQQQETDHQL VTVGQRVQLM  180
ESRQQQMMSF LAKAMQSPGF VAQLVHQQNG NNRHITGLNK KRRLPEQAEE NVACKPVNAL  240
QDGQVVRYQP SMTEAAKALL QQILRINASG RLDNRLHTNG GCLTNNPLPP NNSLGSSGAS  300
SCISSVTLSE VLSTSSQPNL ISDSGFPFNS CSSIISETQS TTTVVPGEAN IPILPEADAL  360
NSQAVHDLPE FSHTLGVTDV NMPETGNVPD MDTTKCILDD LTTIVSDEFS ANTDGDVLLD  420
GMPKLPAIND IFWDQILSAT PASPLTGDTD EIGSLVVEED LLGVQESDWD KLKHMHNLTE  480
QMGLLSSAAQ I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-26910711120Heat shock factor protein 1
5d5u_B2e-261010721129Heat shock factor protein 1
5d5v_B2e-261010721129Heat shock factor protein 1
5d5v_D2e-261010721129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235322.10.0heat stress transcription factor A-1
RefseqXP_010318283.10.0heat stress transcription factor A-1
SwissprotQ84T611e-146HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A3Q7FMN90.0A0A3Q7FMN9_SOLLC; Uncharacterized protein
STRINGSolyc03g097120.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50542137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-115heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]