PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g095770.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 274aa    MW: 31533.2 Da    PI: 6.4226
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g095770.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.93.7e-22115177159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE.EEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv.veitYegeHnhe 59 
                         ++Dg++WrKYGqK++ +s++pr YYrCt++   +C+++k+v+  +e+p +  ++tY g+H+++
  Sopim03g095770.0.1 115 MNDGCAWRKYGQKKILNSKYPRCYYRCTHKydqECRATKQVQIIQENPIImYHTTYFGNHTCN 177
                         58***************************99999***********99975168********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-22104178IPR003657WRKY domain
SuperFamilySSF1182904.84E-22109178IPR003657WRKY domain
PROSITE profilePS5081115.284110179IPR003657WRKY domain
SMARTSM007747.2E-33115178IPR003657WRKY domain
PfamPF031064.5E-22116176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEDFLGENPH NRLIKELVEG KSFTVQLQTL LKQPNESVLA EELIRKIWGS FTQAITVLNS  60
LGNSDNSLTQ GQIEEVDQPN SGSELKKKKK EKQDRRGCYK RRKTSGSWMR ESATMNDGCA  120
WRKYGQKKIL NSKYPRCYYR CTHKYDQECR ATKQVQIIQE NPIIMYHTTY FGNHTCNPTK  180
IPKHTYNNHA MVKHSDSTVL KEEEEEEESK GQSDNASSIV DSNLWQDFMP SSPSAHDSTM  240
AANYNSSYYE EIISSHDMED WAKFGEIEAI EFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-19115176868OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
185102KKKKKEKQDRRGCYKRRK
287102KKKEKQDRRGCYKRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in senescence, biotic and abiotic stress responses by modulating various phytohormones signaling pathways (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Required for the resistance (R) gene Mi-1-mediated resistance to potato aphid (e.g. M.euphorbiae) and root-knot nematode (e.g. M.javanica) (PubMed:21898085). {ECO:0000250|UniProtKB:Q9LY00, ECO:0000250|UniProtKB:Q9SUP6, ECO:0000269|PubMed:21898085}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in response to potato aphid (e.g. M.euphorbiae) infestation and root-knot nematode (e.g. M.javanica) inoculation. Up-regulated by salicylic acid (SA) and suppressed by methyl jasmonate (MeJA). {ECO:0000269|PubMed:21898085}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0621820.0KM062182.1 Solanum habrochaites cultivar EC520061 WRKY transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001352740.10.0WRKY transcription factor 80
SwissprotK4BIZ90.0WRK70_SOLLC; WRKY DNA-binding transcription factor 70
TrEMBLA0A089Q8480.0A0A089Q848_SOLHA; WRKY transcription factor
STRINGSolyc03g095770.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61992233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.17e-40WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]