 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopim03g095270.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
C2H2 |
| Protein Properties |
Length: 239aa MW: 27491.2 Da PI: 7.5367 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim03g095270.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 16.7 | 2.1e-05 | 16 | 38 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C C+++F+++ L H+ +H
Sopim03g095270.0.1 16 YRCRFCNEVFTTSQGLAGHQTKH 38
9*******************999 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 239 aa
Download sequence Send
to blast |
MIYPSLLTRP AGSWCYRCRF CNEVFTTSQG LAGHQTKHRF EESWIKGAHH HKFFCPSADL 60
PLHCRYLGYL MPNPVVIHNQ EHLRHQHLRN PVVQSPQISL SDRRSIFDPL QQSVVSEIPP 120
QPQGHPQHGY LQMLQKHIMN QVNQQRAHQL PHGNKEQIPH VNAHEPITPT LNQNNIYAQH 180
LSQWDQFKIQ VMNGALAAKP LELTHSSIGS TSEVTTGWMC EKKNEDHEVE ELDLELRL*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
